Aphelocoma coerulescens (scrub jay): 138099904
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Entry
138099904 CDS
T10543
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138099904 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138099904 (SMARCC2)
03036 Chromosome and associated proteins [BR:
acoe03036
]
138099904 (SMARCC2)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138099904 (SMARCC2)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138099904 (SMARCC2)
PBAF complex
138099904 (SMARCC2)
GBAF(ncBAF) complex
138099904 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
138099904
NCBI-ProteinID:
XP_068853601
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All DBs
Position
29:2380788..2393558
Genome browser
AA seq
832 aa
AA seq
DB search
MAVRKKDGGPNVKYYEASDTVSQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLARPNIFLHQEIEPKLLGKLKDIVKRHQGTVTEDKSNASHIVCP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDPPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVTDEKSPVTRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYNKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETAGKDEEENGTGSKGEQAKNPELHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQSDGDAKTGRKSKEMEELVSETVKGKPELQPTSASQQMLNFPDKGKEK
PADMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVG
SRTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRV
ASAAAKSALEEFSKMKEEVPTALVEAEAARGSRHLLHKHGGRIDPGRKSGDGSPGSEGSE
TFGSAGSAGRAAMDGPRGAAGTARGTGGGEPGETEGEEGGERRKRTEKAENE
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtcaagtactacgaggcctcggacacc
gtcagccagttcgacaacgtgcggctgtggctcggcaagaactacaagaagtacatccag
gccgagccccccaccaacaaatcgctgtcgagcctggtggtgcagctgctgcagttccag
gaggaggtgttcgggaagcacgtcagcaacgcgcccctcaccaagctgccgatcaaatgc
ttcctggatttcaaggcggggggagccctgtgccacatcctggcagccgcctataaattc
aagagcgaccaaggatggcggcgtttcgatttccagaatccctcgcgcatggaccgcaac
gtggagatgttcatgaccatcgagaaatccctggtgcagaacaactgcctggctcggccc
aacatcttcctgcaccaggagatcgagcccaaactgctgggcaagctcaaggacatcgtt
aagaggcaccagggcaccgtgaccgaggacaagagcaacgcgtcccacatcgtctgcccc
gtgcccgggaacctggaggaagaggagtgggtccggcccgtcatgaagcgcgacaagcag
gtgctgctgcactgggggtactaccccgacagctacgacacctggatcccggccagcgag
atcgaggcgtccgtggaggatcctccgacgccggagaagccccggaaggtccacgccaag
tggatcctggacacggacaccttcaacgagtggatgaacgaggaggactacgaggtgacg
gacgagaagagccccgtcacccgcaggaagaagatctcggccaagacgctgacggacgag
gtgaacagccccgactcggaccggcgggacaagaaggggggcaactacaagaagaggaag
cgctcgccctcaccctcgcccacccccgaggccaagaagaagaacgccaagaagggaccc
tccaccccttacaacaaatccaagcgcgggcaccgcgaggaggagcaggaggacctgacc
aaggacatggacgagccctcgcccgtccccaacgtggaggaggtcaccctgcccaagaca
gtcaacaccaagaaggactcggagtcggcgcccgtcaaggggggcaccatgacagacctg
gatgagcaggaagacgagagcatggagacagctggcaaggacgaggaggagaacggcacc
gggagcaaaggggagcaggccaagaaccccgagctgcacgaggacaacgtgacggagcag
acccaccacatcatcatccccagctacgccgcctggttcgactacaacagcgtccacgcc
atcgagcgccgcgccctgcccgagttcttcaacggcaaaaacaaatccaagacccccgaa
atatacctggcctaccgtaacttcatgatcgacacgtaccggctgaacccgcaggagtac
ctgacctccacggcctgccgccgcaacctggccggagacgtctgtgccatcatgcgggtc
cacgccttcctggagcagtggggcctcatcaactaccaggtggacgccgagagccggccc
acgcccatgggccccccgcccacctcgcacttccacgtgctggccgacacgccctcgggg
ctggtgcccctgcagcccaagacgccccagggccggcagagcgacggcgacgccaagacg
ggccgcaagagcaaagagatggaggagctggtcagcgagacggtgaagggcaagccggag
ctgcagccgacctcggcctcgcagcagatgctgaacttcccggacaagggcaaggagaag
ccggcggacatgcagaacttcggcctccgcaccgacatgtacaccaagaagaacgtcccc
tccaagagcaaagccgccgccagcgccacgcgggagtggacggagcaggagacgctgctg
ctgctggaggccctggagatgtacaaggacgattggaacaaggtgtcggagcacgtgggc
agccggacgcaggacgagtgcatcctgcacttcctgaggctgcccatcgaggatccctac
ctggaggactcggaggcgtccctggggcccctggcctaccagcccatccccttcagccag
tcgggcaaccccgtcatgagcaccgtggccttcctggcctccgtggtggatccgcgcgtg
gcctcggccgcagccaagtcggctctggaggaattctccaagatgaaggaggaggtgccc
acggcgctggtggaggccgaggcggcgcgggggagccggcatttgttgcacaaacacggc
gggcgcatcgatcccggccgtaaatccggtgatggatcgccgggatccgagggatccgag
acctttggaagcgccggcagcgctggaagggcggcgatggatgggccccgaggggcggcg
gggacagcgcgggggacggggggcggcgagccgggggagacggagggggaggagggcgga
gaacgcaggaagcgcacggaaaaggcggaaaatgaataa
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