Aphelocoma coerulescens (scrub jay): 138099920 Help Entry 138099920         CDS       T10543                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism acoe  Aphelocoma coerulescens (scrub jay) Pathway acoe04510   Focal adhesion acoe04512   ECM-receptor interaction acoe04518   Integrin signaling Brite KEGG Orthology (KO) [BR:acoe00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     138099920 (COL2A1)    04518 Integrin signaling     138099920 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     138099920 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:acoe00536]     138099920 (COL2A1) Glycosaminoglycan binding proteins [BR:acoe00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    138099920 (COL2A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  138099920 NCBI-ProteinID:  XP_068853627 LinkDB All DBs Position 29:complement(3407868..3426878) Genome browser AA seq 1511 aa AA seqDB search MPGHRPAPGGRRSEPAATGRVPAATGAAPRPPLLLLLLLCLAAAAAAQDRDLPEAGSCLQ DGHRYSDKDVWKPEPCRICVCDTGTVLCDEITCEELRDCPSPEIPFGECCPICPSEQPSG WKPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGT PGNPGPPGPPGPPGPPGLGGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSG SPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGDRGPPGPQGARG FPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPG PSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESG TPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTG EPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRG FPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVG PTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVG PRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERG AAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAG ARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQG PTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAG PPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPG LPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGSPGSDGPPGRDGAAGVKG DRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRG DKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDG SNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPG RYMRADEAAPGLRPHDTEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSG DYWIDPNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKKHVWFADTINGG FHFSYGAEDLAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESGSLRKALLIQGS NDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGPEQE FGVDLGPVCFL NT seq 4536 nt NT seq  +upstreamnt  +downstreamnt atgcccggacaccgcccggctccaggcggccgccgctcggagcccgccgccaccggccgg gtccccgccgccaccggggccgccccccggccgcccctcctgctcctcctcctcctctgc ctcgccgccgcagccgccgcgcaggaccgggacctccccgaggctggcagctgcctgcag gacgggcaccgctacagcgacaaggacgtgtggaagccggagccgtgccggatctgcgtg tgcgacacggggacggttctgtgcgacgaaatcacctgcgaggagctgcgggactgcccc agccccgagatccccttcggagagtgctgccccatttgccccagcgagcagcccagcggt tggaagcccggccccaagggacaaaaaggtgaacccggtgacatcaaagatgtcgtagga ccccgaggacccccgggcccgcagggccccgcaggtgagcagggacagcgaggggaccgc ggcgagaaaggggagaagggtgcccccggtccccggggcagggatggggaacccggaact ccaggaaatcccggcccccccggcccccccggacccccgggacctcctggcctggggggg gggaactttgcagctcagatggccgggggcttcgacgagaaggccggaggggctcagatg ggcgtcatgcagggaccaatgggccccatgggaccccgcggcccccccgggccctccggc tcccctggtccccaaggattccaaggcaaccccggcgaacccggcgagcctggtgctgct ggtccgatgggtccccggggacctccaggacctcctggaaaacccggtgatgacggtgag accggcaaacccgggaaatccggcgaccgcggcccccctggcccccagggcgctcgtggc ttccccgggacccccggcctgcctggagtcaaaggccaccggggctaccctggcctggac ggtgccaaaggagaggcgggagcgcccggagccaagggcgagtccggctccccgggtgag aacggctcccccggccccatgggtccccgcgggctgcctggagagcgaggacgccccggc ccttcgggcgctgcgggcgctcgtggcaacgacggcctccctggcccagccggaccccct ggtcccgtcggcccagcaggagcccccggcttccccggtgcccctggctccaagggtgaa gcaggtcccacaggagcgcggggacccgagggtgcccaggggccccgtggagaatccggg acccccggctcgcccggccccgccggcgcccccgggaacccaggtaccgatggcatcccc ggagcgaagggatcagcgggcgccccgggcatcgctggcgctccaggattccccggcccc cgcggcccgcccggacctcagggagccaccggcccgctgggccctaagggacagacgggc gaacccggcatcgcgggcttcaaaggcgagcagggacccaagggagagacgggccccgca ggaccccaaggtgcccccggaccggccggggaggaagggaagagaggagcccgtggagag cccggagctgccggacctttggggccacctggagagaggggcgctcccggcaatcgcggc ttccccgggcaggacgggctggccggccccaagggggccccaggtgagcgtggccccgct ggcctggccggccccaaaggagccaccggcgaccccggacgccccggagagcccggcctg cccggagccaggggtctcactggccgccctggggatgccggaccccaaggcaaagtcggc cccacgggtgcccccggtgaggacgggcgccccggaccccccggcccgcagggggctcgg ggccagcctggcgttatgggattccccggtcccaaaggtgccaacggtgagcctggaaaa gccggggaaaaaggacttcctggagcgccggggctgaggggacttcctggcaaggacgga gagactggagctgctggacccccaggacctgctggccccgcaggggagaggggagagcaa ggagcccccggcccctctggcttccaggggctgccagggccaccaggtccccccggcgag agcggcaaacctggagatcagggtgttcccggagaagctggagcccctgggctcgtgggt cccaggggcgagcgcggcttccctggtgagcgcggctctcccggcgcccagggcctgcag gggccccgcggcctccccggcacgcccggcaccgatggacccaagggcgccactggcccc gccggccccaacggcgcccagggacccccagggctgcaggggatgcccggagagagagga gcagccggaatcgccggtcccaagggggacaggggagacgtcggagagaagggacctgag ggagcccccggaaaggacggagctcgcggtctgaccggtcccatcggcccccctggccct gctggccccaacggcgagaagggcgagtccggcccccctggcccatctggagccgcgggt gcccgcggtgcccctggagagcgtggagagcccggggcccccggccccgctggattcgcc ggacccccgggtgctgatggacaacccggagccaagggcgagcagggggagcctggccag aagggcgacgccggtgcccccgggccccagggtccctccggggctccaggcccgcagggt cccactggtgtcaccggccccaaaggagcccggggcgctcagggacccccgggagccacc ggattccccggagctgccggacgcgttggaccccccggccccaatggtaaccccggcccc cctggcccccccggctccgcgggcaaggatggccccaagggcgcacggggcgacgcagga cccccgggccgggcgggggacccggggctgcagggccccgccggcccccccggcgagaag ggcgagcccggcgaggacggccctgcgggtccggacggcccccccggtccccaagggctg gcaggacagcgcggcatcgtggggctaccggggcagcgtggcgagcgtggattcccgggg ctgcccgggccctcgggagagcctggaaaacagggagcgcctggatctgctggagaccgc ggaccccccggccctgtgggaccccccgggctgaccgggccagccggagagcctggacgg gagggaagtcccggctctgacggacccccgggcagggatggggcggccggagtgaagggc gaccgtggcgagaccggccccgtgggtgctcccggcgctcctggcgctccaggagctcct ggccccgtgggacccactggaaaacagggagacagaggagagacgggtgctcagggtccc atgggtccctccggccccgctggcgcacggggaatgccgggtccccagggcccacgcggg gacaaaggcgaggcgggcgaggccggtgagcgtggcctgaaggggcaccggggcttcacc gggctccaggggctgcccgggccccccggtccttctggagaccaaggtgctgccgggcct gcaggtccctccgggcccaggggtccccccggccctgtgggcccctcgggcaaggatggc tccaatgggatgcccgggcccatcggcccccccgggccccgcgggaggagcggcgagccc ggcccagcgggcccccccgggaaccccggcccacccggcccccccgggccccctggcact ggcatcgacatgtcggcgttcgcagggctggggcagcccgagaagggccccgaccccggg cgctacatgcgggcggacgaggcggctccggggctgcggccgcacgacactgaggtggac gccaccctcaaggccctcaacaaccagatcgagagcatccgcagccccgagggctcccgc aagaacccagccaggacctgccgcgacatcaaactctgccaccccgactggaagagtggc gattactggatcgaccccaaccagggctgcaccctggacgccatcaaggtcttctgcaac atggccacgggggagacgtgcgtgtaccccagccccggcagcatccccaggaagaactgg tggagcagcaaagccaaggagaagaagcatgtctggttcgccgacaccatcaatggtggc ttccacttcagctacggcgctgaggacctggcgcccaacacggccaacatccagatgacc ttcctgaggctgctgtccaccgagggctcccagaacgtcacctaccactgccgcaacagc gtggcctacctggacgaggagtcaggcagcctgaggaaggccctgctcatccagggctcc aacgacgtcgagatccgtgccgagggcaacagcaggttcacctacagcgtgctggaggac ggctgcacgaaacacaccgggaagtggggcaagacagtcatcgagtaccgctcgcagaag acctcacgcctgcccatcgtggacattgcacctatggacattgggggacccgagcaggag tttggggtcgacctcggccccgtctgcttcttgtaa

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