Aphelocoma coerulescens (scrub jay): 138100016
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Entry
138100016 CDS
T10543
Symbol
SMARCD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138100016 (SMARCD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138100016 (SMARCD1)
03036 Chromosome and associated proteins [BR:
acoe03036
]
138100016 (SMARCD1)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138100016 (SMARCD1)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138100016 (SMARCD1)
PBAF complex
138100016 (SMARCD1)
GBAF(ncBAF) complex
138100016 (SMARCD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
138100016
NCBI-ProteinID:
XP_068853783
LinkDB
All DBs
Position
29:complement(2740690..2748157)
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AA seq
511 aa
AA seq
DB search
MAARAGFQSGPASGGGAGAAPGAALGPGAPGGAVRMGPAPGQGLYRSPLPGAAYPRPGML
PGGRLAPQGPAMGPPGYGGSPAVRPALAQAGLDQARKRPAPQQLQQVQPQAVPNRNHNAK
KKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRI
FISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIEL
DKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARL
LGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHAL
LMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKI
HETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQ
PWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggccgggttccagtcggggcctgcgagcggcggcggcgccggggccgcg
cccggggccgcgctgggcccgggagcgccgggcggggcggtgcgcatgggcccggcgccg
gggcagggcctgtaccgctcgccgctgcccggagccgcctacccgcgccccgggatgctg
ccgggcggccgcctggcgccacagggcccggccatgggtcctcccgggtacggcgggagc
cctgcggtgcggcccgcgctggcgcaggccgggctggaccaggctcgcaagcggccggcg
ccgcagcagcttcagcaggtgcagccgcaggcggtgcccaaccgcaaccacaacgccaag
aagaagaagatggcagataaaatcctccctcagcggatccgtgagctcgtgcccgaatcc
caggcctacatggacttgttggcctttgagaggaagctggaccagaccatcatgaggaag
cgcttggatatccaggaggctctgaaacgccccatcaagcaaaagcgaaagctgcgtatt
tttatctccaacaccttcaacccagccaagtcggatgcggaggatggcgaaggaaccgtc
gcctcctgggagcttcgggtggaaggacggctgttggaggattctgctctgtccaaatat
gatgccaccaagcagaaaagaaaattttcgtccttctttaaatctctggtcattgaactt
gataaagacctgtatggccctgacaatcacctagtagagtggcacaggactgctacgact
caggagacagacggcttccaggtgaagaggccgggagatgtgaacgtgcgctgcactgtc
ctgctgatgctggattaccagcctccccagttcaaactggatccgcgcctggctcggctc
ctgggcatccacacccagacccggcccgtgatcatccaggccctgtggcagtacatcaag
acccacaagctgcaggacccccacgagcgggagttcgtcatctgtgacaagtacctgcag
cagatatttgagtcgcagcggatgaagttctctgaaatcccacaaaggcttcacgccctg
ctgatgccccctgaaccgatcatcatcaatcatgtgatcagtgttgacccaaatgaccag
aagaaaacagcctgctatgacattgatgtggaggtggacgataccctgaaaactcagatg
aattcctttctgctctccacagccagtcaacaggaaattgctgctctggataataagatc
catgaaacaattgagaccatcaaccagctgaagacacagcgcgagttcatgctgagcttt
gcccgagatcctcagggcttcatcaatgactggctccagtcccagtgccgggatctgaag
acaatgactgatgtcgttgggaatcccgaggaggagcgcagagccgagttctacttccag
ccgtgggcgcaggaggccgtgtgccgatacttctactccaaggtgcagcagagacggcag
gaattggagcaggccctggggatccggaacacatag
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