Aphelocoma coerulescens (scrub jay): 138100046
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Entry
138100046 CDS
T10543
Symbol
PAN2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138100046 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138100046 (PAN2)
Enzymes [BR:
acoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
138100046 (PAN2)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138100046 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
138100046 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
TMCCDC2
Motif
Other DBs
NCBI-GeneID:
138100046
NCBI-ProteinID:
XP_068853825
LinkDB
All DBs
Position
29:2230573..2243516
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AA seq
1191 aa
AA seq
DB search
MNFEGLNPSLAEYAPPLLDPVLDAHLNPSLVELDPEGVSLEGMAVPESVHLMEGMYSELH
TAVSEVGVPVSVSHFDLHEEMLWVGNHGGHATSFFGPTLERYSSFQVNSSDDIRQIQSLE
NGVLFLTKTNLKYMSRGGLIIFDYLMDESEDMHSLLLTDNNTLLVAGLQNHVLEIDLNTV
QETQKYTVEVPGITIMRQSNRFFFCGHTSGKVSLRDLRTFVVEHEFDAYSGSLSDFDVHG
NLLVTCGFSSRMNGLACDRFLKVYDLRMMRATTPLQVHIDPFFLRFIPTYTSRLAIISQT
GQCQFCEPTGLANPADIFHVNTVGPLIMTFDVSASKQALAFGDSEGCVHLWADSPEVTFN
AYSRETDFALPCMVDTLPHLDWNQDLVPLSLIPVPLTSDALLSDWPAANSAPAPRRAPPV
DPEILRTMKKVGFIGYAPNPRTKLRNQIPYRLKEMDNEFDNFSQVPESPIGREEEPHLYR
VAKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLVQ
NHLCQKEFCLGCELGLLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSDEATGK
VNLGRLIQSWNRFILTQLHQETQEQEGPQAYRGAGSSSFGSSGDSVIGQLFSCEMENCSM
CRCGKETVRVSSTLLFTLSYPDSTEKPAKDYEFAQILKRSICLEQNTQAWCENCEKYQPT
VQTRNIRCLPDVLVINCEVNSSKEADFWKTQAEYSFQKAMMKRGGFDITKGKEISLGEWK
DLGNPDTGHLYPSVEELKNIWIPHAIKMRLTKSKELDVSNWSETDELSPTDDPESVYIYD
LMATVVHILDSRTGGSLVGHIKVGETYHQRKEGVTHQQWYLFNDFLIEPVDKCEAVQFDM
SWKVPAILYYARRNLNAKYNLVIKNPIEASVLLAEASLARKQRKCHATFIPLMLSEMPQA
GDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGVPFIDDYIST
QEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKFVGHGLQKDFRVI
NLMVPKDQVIDTVYLFHIPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTALQLYRKYL
ELSPQGSEPEEFRKVLKGLYEKGRKLDWKVPEPDSQSSPKHGAVFPPVLAL
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgaagggctcaacccctccctggccgagtacgcgcctcccctgctggacccc
gtcctggacgcgcacctgaaccccagcctggtggagttggatcccgagggagtgtccctg
gaggggatggcggtgccggagtcggtgcacctgatggagggcatgtacagcgagctgcac
acggccgtctccgaggtcggcgtgcccgtctccgtgtcccacttcgacctgcacgaggag
atgctgtgggttgggaaccacgggggccacgccacctccttcttcgggccgacgctggag
cgctactcctccttccaggtgaacagcagcgatgacatccgccagatccagagcctggag
aacggcgtcctgttcctcaccaaaaccaacctcaagtacatgtcccgcggcggcctcatc
attttcgactacctcatggatgaatccgaggacatgcacagcctgctgctgacggacaac
aacaccctgctcgtggccgggctgcagaaccacgtcctcgagatcgacctcaacaccgtc
caggagacgcagaagtacaccgtggaggtgcccggcatcaccatcatgaggcaatccaac
cgcttcttcttctgcgggcacacctcgggcaaggtgtccctgcgtgacctgcgcaccttc
gtggtggagcacgagttcgacgcctactccgggagcttgtccgacttcgacgtgcacggg
aacctgctggtgacctgcggcttctccagccgcatgaacggcctggcctgcgaccgcttc
ctcaaggtctacgacctgcgcatgatgagggccaccacccccctgcaggtccacatcgac
cccttcttcctccgcttcatccccacctacacttcccgcctggccatcatctcgcagaca
ggccagtgccagttctgtgagcccaccgggctggccaaccccgccgacatcttccacgtg
aacaccgtggggccgctcatcatgaccttcgacgtgtcggccagcaagcaggccctggcc
ttcggcgactccgagggctgcgtccacctctgggccgactccccggaggtgacgttcaac
gcctattcccgggagaccgacttcgccctgccctgcatggtggacacgctgccgcacctg
gactggaaccaggacctggtgccgctgtcgctcatcccggtgccgctgaccagcgacgcg
ctgctctccgactggcccgccgccaactccgccccggcgccgcggcgagcccccccagtt
gatcccgagattctgcgcaccatgaagaaagtggggttcatcggctacgccccaaacccc
aggaccaagctccgtaaccagattccttatcggttaaaggagatggacaatgagtttgac
aacttcagccaagtccccgagtcccccatcgggcgtgaggaggagccacacctctacagg
gtggccaagaagtacaggaaggtcaccatcaaatactccaagctggggctggaggatttt
gacttcaagcattacaacaagacgctgttcgcggggctggagccccacattcccaacgcc
tactgcaactgcatgatccaggtgctgtatttcctggagccagtccgctgcctggtccag
aaccacctgtgccagaaggaattctgcctgggctgcgagctgggcttgctcttccacatg
ctggacctgtcccgaggagacccctgccagggaagcaacttcttgcgggctttccgcacg
atcccggaggcttcggcgctggggctgatcctggcggactcggacgaagccacggggaag
gtgaacctggggaggctcattcagagctggaaccgtttcatcctcactcagctgcaccag
gaaacccaggagcaggagggaccccaggcctaccggggggctggcagcagcagctttggc
tcctcgggggactctgtcatcgggcagctgttcagctgtgagatggagaactgcagcatg
tgccgctgcgggaaggagaccgtccgtgtgtcctccacgctgctcttcaccctctcctac
cccgacagcaccgaaaaaccagccaaggattacgagtttgcccaaattttgaagcgcagc
atctgcttggagcagaacacgcaagcctggtgtgagaactgtgagaaataccagcccacg
gtgcagacccggaacatccgctgcctgccggacgtgctggtcattaactgtgaggtgaac
agctccaaggaggcagatttctggaagacacaggctgagtattcctttcagaaagccatg
atgaagagaggaggctttgacatcaccaagggaaaggagatctctcttggagagtggaag
gatctggggaaccctgacacggggcatttgtatccttccgtggaggaactgaagaacatt
tggatccctcacgccatcaagatgaggttgaccaagagcaaagagctcgacgtgagcaac
tggagcgagaccgatgagctgagcccgacggacgaccccgagtccgtgtacatctacgac
ctgatggccaccgttgtccacatcctggattcccgcaccgggggcagcctggtggggcac
atcaaggtgggagagacctaccaccagcggaaggagggggtcacacaccagcagtggtac
ctcttcaacgacttcctcatcgagcccgtggacaagtgcgaggccgtgcagttcgacatg
agctggaaggtgccagccatcctctactacgcccggaggaacctcaacgccaagtacaac
ctcgtcatcaagaaccccatcgaggccagcgtcctgctggccgaggcctcgctggcccgt
aagcagcgcaagtgccacgccaccttcatccccctcatgctgagcgagatgccccaggcg
ggagacctggtggggttggacgcggagttcgtcacgctgaacgaggaagaggccgagctg
cgcagtgatggcaccaagtccaccatcaagcccagccagatgtcggtggcccggatcacc
tgcgtgcgtgggcagggccccaacgagggcgtgcccttcatcgatgactacatctccacc
caggagcaggtagtggattacctgacccagtactccgggatcaagccaggagacctggat
gccaagatctcctccaagcacctgaccaccctcaaatccacgtacctgaagctgcgtttc
ctcatcgacgtgggcgtcaagttcgtgggccacgggctgcagaaggacttccgtgtcatc
aacctgatggtgcccaaggaccaggtgatcgacaccgtgtacctgttccacatcccgagg
aagaggatgatctccctgcgcttcctcgcctggtacttcctggacctgaagatccagggg
gagacccacgacagcatcgaggatgctcggacggcgctgcagctctaccgcaagtacctg
gagctgagcccgcagggctcggagcccgaggagttccggaaggtgctcaaggggctctac
gagaagggccgcaagctggactggaaggtgcccgagcccgacagccagagcagccccaag
cacggggccgtgttcccccccgtgctggccctgtga
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