Aphelocoma coerulescens (scrub jay): 138100126
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Entry
138100126 CDS
T10543
Symbol
RFX1
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II regulatory factor RFX1
KO
K09173
regulatory factor X 1/2/3
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
acoe03000
]
138100126 (RFX1)
Transcription factors [BR:
acoe03000
]
Eukaryotic type
Other basic domains
RF-X
138100126 (RFX1)
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Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
138100126
NCBI-ProteinID:
XP_068853950
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All DBs
Position
30:72456..77049
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AA seq
595 aa
AA seq
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MYVAGGQILGSPPAPPQGSTGTPGAPGGGTYVIQGGYMXGGGGAAYAHTTRASPATVQWL
LDNYETAEGVSLPRSALYCHYLLHCQGHKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNS
KYHYYGLRIKAGSPLLRLVEDQQHLAMRQQPFAQKQRLKPVQKVEGGVTNGVSSGPAPPG
VPDISAQVQQYQQFLDASRTLPEFPEIDVQGKGLPEGAGAEDLRVFQQLYREHCEAIVDV
MINLQFSLVETLWKSFWRCSGETEAQEEAERRLPRRRLLLLARHEPVLRWVRDCDHALYQ
GLVEILVPDVLRPIPSALTQAIRNFAKSLESWLGNAMVSMPEEMVRVKAAAAGAFAQTLR
RYTSLNHLAQAARAVLQNTAQISQMLSDLNRVDFANVQEQAAWVCRCEARVVQRLEQDFK
ATLGQQHSLEQWAAWLDAVVGRVLRPHLGTPGLPRAAKLFLLKWSFYSSMVIRDLTLRSA
ASFGSFHLIRLLYDEYMYYLVEQRVARARGTCPIAVMGEFANLTSSLNSQDPDKDEEEEE
EEESDEELPAELGLGGGEGPPDALEPPLEPPLDPPPAKLPRADPRGLFVQALPSS
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtggcggggggacagattttggggagcccccccgccccccctcaaggcagcacc
gggacgcctggggctcccggcggaggcacctacgtcatccagggggggtacatgnngggg
ggggggggcgcggcctatgctcacaccacccgcgcctcccccgccacggtgcagtggctg
ctggacaactacgagacggcagagggggtgagtttgccccgcagcgccctgtactgccac
tacctgctgcattgccaaggccacaagctggagcccgtcaacgccgcctccttcgggaag
ctcatacgctcggtgttcatggggctgcgcacgcggcgcctcggcaccagggggaattcc
aagtaccactactacgggctgcgcatcaaggcggggtcgccactgctgcggctcgtggag
gatcagcagcacctggccatgcgccaacagccttttgcccagaaacaacgcctcaaaccc
gtgcagaaggtggaggggggggtcaccaatggggtgtcatcggggccagccccccctggc
gtccctgacatcagcgcccaggtgcagcagtaccagcagttcctggatgcctcccgcacg
ctgccggagttccccgagatcgacgtgcaggggaaggggctccccgagggcgcaggggcc
gaggacctgcgcgtgttccagcagctctaccgggagcactgcgaggccatcgtggatgtg
atgatcaacctccagttctcgctggtggagacactctggaaaagcttctggcgctgcagc
ggcgagaccgaggcgcaggaggaggcggagcggcgcctgccccgacggcggctgctgctg
ctggcccggcacgagcccgtcctgcgctgggtgcgcgactgcgaccacgccctgtaccag
ggtctggtggagatcctggtgcccgacgtgctgcgccccatccccagtgccttgactcag
gcaattcggaattttgccaagagcctggagagctggttggggaacgccatggtcagcatg
cctgaggagatggtccgcgtcaaggcagcagcggctggggccttcgcgcagaccctgcgg
cggtacacgtccctgaaccacctggcacaggcggcgcgagccgtgcttcagaacacggcc
cagatcagccaaatgctcagcgacctcaaccgcgtcgacttcgccaacgtccaggagcag
gcggcctgggtgtgccgctgcgaggcgcgggtggtgcagcgcctggagcaggatttcaag
gccacgctggggcagcagcactcgctggagcagtgggcagcctggctggatgccgtcgtc
ggccgtgtcctgcgcccgcacctgggcacacccgggctgccccgcgccgccaagctcttc
ctgctcaagtggtccttctacagctccatggtgatccgggacctgaccctgcgcagcgcc
gccagcttcggctccttccacttgatccggctgctgtatgacgagtacatgtactacctg
gtggagcagcgtgtggcacgggcccggggcacctgccccatcgccgtcatgggcgagttt
gccaacctaacgagctccctgaactcgcaggaccctgacaaagacgaggaggaggaggag
gaggaggagagcgatgaggagctgccagctgagctggggttggggggtggcgaggggccc
cccgatgccctggagccccccctggagccccccctggaccctcccccagccaagctgccc
cgcgctgacccccgcgggctcttcgtgcaggccctgccctcgagctga
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