Aphelocoma coerulescens (scrub jay): 138100150
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Entry
138100150 CDS
T10543
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138100150 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138100150 (SMARCA4)
03036 Chromosome and associated proteins [BR:
acoe03036
]
138100150 (SMARCA4)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138100150 (SMARCA4)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
138100150 (SMARCA4)
Chromatin remodeling factors
BAF complex
138100150 (SMARCA4)
PBAF complex
138100150 (SMARCA4)
GBAF(ncBAF) complex
138100150 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
138100150
NCBI-ProteinID:
XP_068853978
LinkDB
All DBs
Position
30:16497..40473
Genome browser
AA seq
1610 aa
AA seq
DB search
MATPEPPLGGTPRPGPSPGPGPSPGSMLGPSPGPSPGSGHSGHALPAPGYAPDTIHPLHK
PLDPMHEKGMSEDPRYGQMKGMGMRPGGHTGMGPPPSPMDQHSQGYPSPLGGSEHASSPV
PSNGPSSGSAGGSGAALDGSGSDSPALGRGPSPFNAAQLHQLRAQIMAYKLLARGQPLPE
HLQVAVQGKRPLPGMQPQIPALPPPAGTAQGPGQAPGAGPAPPGYSRPHGIGGPNMPPPG
PSGVPPGMPGQPPGGPPKPWPEGPLSAAAPGGAPQKLLPPPPAGRPSPVPPAVPPASPGP
PPPSPGQPAPPALPIHPKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPG
SLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREA
RITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVSGKIQKLTKAVATYHAN
TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ
HKAAQVAKEKKKKKKKKKAENTEGQAPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTG
TDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPALPVEEKKKIP
DPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVN
GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP
LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILA
KIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPT
IFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEK
VEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM
FQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTI
MEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTV
IIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA
GMFDQKSSSHERRAFLQAILEHEEQDESRQSAGSGSFPHAASSLCLGAESEEAPLKEEDE
VPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWILKDDAEVE
RLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKR
EPEGPAGPPPSARSRDKDEESRKQKKRGRPPAEKLSPNPPPLTRKMRKIVDAVIKYKDSS
SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNA
QTFNLEGSLIYEDSIVLQSVFTSVRQKVEKEEESDGEESEEEEEGEEEGSESEARSVKVK
IRLGRKEKVPERGKGRRRGGRGGRPKPLLSDDESEDEQEEDRSGSGTEDD
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccagaacctccgctgggagggaccccccggcccggcccctctcctggtccc
ggcccctccccgggatccatgctgggcccctctcccggcccttcgcccgggtccggacac
tcgggacatgcgctcccggcgccaggatacgccccggacaccatccaccccctgcacaag
cccctggatccgatgcacgagaagggaatgtcggaggatccacgctacgggcagatgaag
ggaatgggaatgcggccgggggggcacacgggaatggggcccccccccagccccatggat
cagcattcccaaggttatccatctcctctgggcggttcggagcacgcctccagcccagtg
ccatccaacggcccctccagcggctctgcaggcggctctggagcggcgctggatggctcc
ggctcggactcgccagcgctgggccggggcccgtccccattcaacgcggctcagctgcac
cagctccgcgcccagatcatggcctacaagctgctggcgcgggggcagccgctcccagag
cacctccaggttgccgtccagggaaagcggcccctgcccgggatgcagccacagattcct
gctctacctccgcccgctggcaccgcgcagggcccgggacaagcgcccggagcagggcca
gcaccgcccgggtattccagacctcacggaataggggggcccaacatgcccccacccgga
ccctcaggagttccccctggcatgccaggacagccccctggggggccccccaagccctgg
ccggaagggccgctgtcggcggcggctccaggcggggccccccagaagctgctgccgccc
ccccctgccggccgcccctcccccgtgcccccggctgtgcccccagcatcccctgggccc
cccccaccctctccggggcagccggcgccgcctgcgctcccgatccatcccaaacagaac
cggatcacccccatccagaaaccccgcggcctcgaccccgttgagatcctgcaggagcgt
gagtacaggctccaagcccgcatcgcccaccgcatccaagagctggaaaaccttcccggc
tccctggccggggacctgcggaccaaagcaaccatcgagctcaaggctctgcggctgctc
aacttccagcgccagctgcggcaggaggtggtggtgtgcatgcggcgggacacggcgctg
gagacggcgctcaacgccaaggcctacaagcgcagcaagcggcagtcgttacgcgaggcc
cggatcacagagaagctggagaagcagcagaagatcgagcaggagcggaagcgccggcag
aagcatcaggaatacctcaacagcatcctgcagcatgccaaggacttcaaggagtaccac
cggagcgtgagcgggaagatccagaagctgaccaaggcggtggccacgtaccacgccaac
accgagcgcgagcagaagaaggagaacgagcgcatcgagaaggaacggatgcgccggctc
atggcggaggatgaggagggctaccggaagctcatcgaccagaagaaggacaagcgcctg
gcctacctgctgcagcagacagacgagtacgtggccaacctaacagagctcgtgcggcag
cacaaggcagcccaggtggccaaggagaagaaaaagaagaagaagaagaagaaggcagag
aacaccgagggacaggctccggccatcggccctgatggggagccgctggatgagacgagc
cagatgagcgacctcccagtaaaggtgatccatgtggagagtgggaagatcctcaccggc
accgatgcgcccaaggctgggcagctcgaggcctggctggaaatgaatcccgggtacgag
gtggctccacgctccgacagcgaggagagcggctccgaggaggaggaggaggaggaggaa
gaggagcagccgcagccggcacagccggcgctgcccgtggaggagaagaagaagattccg
gatccggacagcgacgacgtctcagaagtggacgcccgacacatcatcgagaacgccaag
caggacgtggatgatgagtacggggtgtcacaagcactggcgcgggggctccagtcctac
tacgccgtggctcacgccgtgaccgagcgcgtggacaagcagtcggccctgatggtcaat
ggtgtcctcaagcagtaccagatcaaaggcctggaatggctcgtgtccctgtacaacaac
aacctcaatgggatcctggcagacgagatgggattggggaaaaccatccagaccatcgcc
ctcatcacatacctcatggaacataagcggatcaacggcccattcctcatcatcgtcccg
ctctcgactttgtccaactgggcctacgagttcgacaaatgggctccttctgtggtcaag
gtctcctacaagggctctccggcggcacgacgcgcctttgtcccgcagctccggagtgga
aaattcaatgtcttgcttacaacatacgagtacatcatcaaggataagcacatcctggcc
aagatccgctggaagtacatgatcgtggacgaggggcaccggatgaagaaccaccactgc
aaactgacgcaggtgctcaacacccactatgtggccccgcggcggctgctcctcaccggg
actccgctccagaacaagctcccggagctctgggccctcctcaacttcctgctcccgacc
atcttcaagagctgcagcaccttcgagcagtggttcaatgcgcccttcgccatgaccggg
gagaaggtggacctgaatgaggaggagacgatcctcattatccgccgcctgcacaaggtg
ctccggcccttcctgctccggcgcctcaagaaggaggtggaagctcagctaccggaaaag
gtcgagtatgtgatcaagtgcgatatgtcggcgctgcagcgggtcctgtaccggcacatg
caggccaagggtgtcctcctcactgacggctccgagaaggacaagaaggggaaaggtggc
acgaagacgctgatgaacacgatcatgcagctgcgcaagatctgcaaccacccctacatg
ttccagcacatcgaggaatccttctcggagcacttggggttcacgggcgggatcgtgcag
gggctggatttataccgtgcctccgggaagtttgagctcctggaccggatcctgcccaag
ctccgggccaccaaccacaaggtgctgctcttctgccagatgacctccctgatgaccatc
atggaggactatttcgcttaccgcggcttcaaatacctcaggctggatgggaccacgaag
gcagaggaccgggggatgttgctgaagacgttcaatgagccaggctctgagtacttcatc
ttcctgctgagcacgcgggctggagggctgggcctcaacctccagtcggccgacacagtc
atcatcttcgacagcgactggaacccgcaccaggacctgcaggcccaggaccgggcccac
cgcatcgggcagcagaacgaggtccgtgtgctccggctctgcactgtcaacagcgtggag
gagaagatcctggcggccgccaagtacaagctcaatgtggaccagaaggtgatccaggcc
ggaatgttcgaccagaaatcctccagccacgagcgacgggcgttccttcaggccatcctg
gagcacgaggagcaggatgagagcagacagagcgcgggcagtggcagcttcccccacgct
gcctcctccctgtgcctgggcgctgagtcggaggaagcacctctaaaggaggaagacgag
gtgcccgacgatgagaccgtgaatcagatgatcgcccggcacgaggaggagttcgacttg
ttcatgcgcatggacctggaccggcggcgggaggaggcacggaatcccaagcggaagcca
cggctgatggaggaggacgagctcccgtcctggatcctgaaggacgacgccgaggtggag
cggctcacctgcgaggaagaggaggagaagatgttcggccgcggctcccggcatcgcaag
gaagtggattacagtgattccctcacggaaaaacaatggctcaaggccatcgaggagggg
acactggaggagatcgaggaggaagtccggcagaagaaatcctcgcggaagcggaagcgg
gagcctgagggccccgcggggccccccccgagcgcccggagtcgggacaaggatgaggag
agccggaagcagaagaagcgtgggcggcccccagccgaaaaactgtccccaaatccaccc
cccctgacccggaaaatgcggaaaatcgtggatgccgtcatcaagtacaaggacagcagc
agcgggcggcagctgagcgaggttttcatccagctcccgtctcgcaaggagctgccggaa
tactatgagctcatccggaaacctgtggacttcaagaagatcaaggagcggatccggaac
cacaagtaccggagcctcaacgacctggagaaggatgtgatgctgctgtgccagaatgcc
cagaccttcaacctggaggggtccctgatctatgaggattccatcgtgctccagtccgtg
ttcaccagtgtccgacagaaggtggaaaaggaggaggaaagcgatggagaggagagcgag
gaggaggaggagggagaggaggaaggatccgagtcggaggcccgctcggtgaaggtgaag
atccgtctgggccgaaaggagaaggttccggagcgcgggaagggccggcgccgggggggg
cgggggggacgccccaaacccctcctgagcgacgacgagagcgaggacgagcaggaggag
gatcgttccggcagcggcaccgaggatgactga
DBGET
integrated database retrieval system
