Aphelocoma coerulescens (scrub jay): 138100206
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Entry
138100206 CDS
T10543
Symbol
ATG4D
Name
(RefSeq) cysteine protease ATG4D isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04136
Autophagy - other
acoe04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
138100206 (ATG4D)
04136 Autophagy - other
138100206 (ATG4D)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
acoe01002
]
138100206 (ATG4D)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
acoe04131
]
138100206 (ATG4D)
03029 Mitochondrial biogenesis [BR:
acoe03029
]
138100206 (ATG4D)
Peptidases and inhibitors [BR:
acoe01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
138100206 (ATG4D)
Membrane trafficking [BR:
acoe04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
138100206 (ATG4D)
Mitochondrial biogenesis [BR:
acoe03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
138100206 (ATG4D)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Peptidase_C78
Motif
Other DBs
NCBI-GeneID:
138100206
NCBI-ProteinID:
XP_068854076
LinkDB
All DBs
Position
30:203336..206493
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AA seq
604 aa
AA seq
DB search
MSGGGEAPGPPPGPAPGSAPGSAPGPPPGAERGGQRVRGRVLAAWNSVKYGWTLRPRPHF
SPRDPLYLLGRVYAPGNGEELARFRRDFCSRLWFTYRSGFPALPGTPRTTDCGWGCTLRS
AQMLLGQGLVLHLLGRDWTWPEALLELEPGGTRRSRDPPGRTRDPSGRTRPPRDGPRVPR
DGHGSPRLDTGSPGWTRDPLGCTQDPPGCMRPPQNGQGPPGVDTGRPRMDAESLGGTRDP
SGQARDPPGKLRDPPGRTRPPPGSPRAPRDAEQRHRAIVSWFSDHPRAPFGIHRLVELGR
EFGKSAGDWFGPAIAAHLLRGAVESCTETPGLAVYVAQDCTVYKGDVARLVRGDPEGGTA
GPGAPGQGTPGTPGASGHGTPGSGTPGQGTPGAPGASGHGTPGSGTPGRGTPGAPGASGH
GTPGSGTPGAPGQRRGLVLLVPARLGGESLNPVYVECVKELLQLRSCLGIIGGKPRHSLF
FLGFQGDSLLYLDPHLCQPSVDTAREKFPLQSFHCCFPRKMPFGKMDPSCTFGFYAGGTE
LEQLWGDLARVLAPPSAPERYPIFTLAEGHAQDQALDTPPGPPPSLPRRGKRPKKPNSDE
FVFL
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgagcggggggggcgaggcaccgggaccccccccggggccggcaccgggatcggcaccg
ggatcggcaccgggacccccccccggggccgagcggggcgggcagcgcgtgcggggccgc
gtcctcgcggcctggaacagcgtcaaatacggatggacgctgcggccgcggccccacttc
agcccgcgggaccccctgtacctgctgggcagggtctacgcgccggggaacggggaggag
ctggcgcggttccggcgggatttctgctcccgcctgtggttcacgtaccgcagcggcttc
cccgcgctgcccgggaccccccggaccacggactgcggctggggctgcaccctgcgcagc
gcccagatgctgctgggccaggggctcgtgctgcacctgctgggccgggactggacgtgg
ccggaggcgctgctggaactggaaccgggggggacccggaggagccgcgaccccccaggc
cggacacgggacccctcgggacggacacggcccccgcgggatggcccgagggttccccgg
gatggacatggatcccccaggctggacaccggatcccctgggtggacacgagaccccctg
ggatgtacccaggaccctccaggatgcatgcgacccccccagaatggacagggaccgcct
ggggtggatacgggacgccccaggatggatgcggagtccctcggggggacacgggacccc
tcgggacaggcacgggaccccccggggaagctccgggacccccctggacggacacggccc
cccccgggatccccccgagccccccgggacgcggagcagcggcaccgcgccatcgtgtcc
tggttctccgaccacccccgcgccccgttcgggatccaccggctcgtggagctgggccgg
gagttcgggaagagcgccggggattggttcggccccgccatcgccgcgcacctgctgcgg
ggggccgtggaatcctgcacggagacccccgggctcgccgtctacgtggcccaggactgc
accgtttacaagggggacgtggctaggttggtgcggggcgaccccgaggggggaacagcg
ggaccgggagcgccgggacaggggacaccgggaacaccgggagcctcgggacacggaaca
ccaggatcaggaacaccgggacaggggacaccgggagcaccgggagcctctggacacgga
acaccaggatcaggaacaccgggacgggggacaccgggagcaccgggagcctctggacac
gggacgccgggatcaggaacgccgggagcgccggggcagcgccgcggcctcgtcctgctg
gtgccggcgcggttggggggcgagagcctgaaccccgtgtacgtggagtgtgtcaaggag
ctgctccagctccgctcctgcctcggcatcatcggcggaaaacctcggcactcgcttttc
ttcctcggcttccaaggcgattccctgctctacctggacccgcacctctgccagcccagc
gtggatacggcccgggagaaattcccgctccagtctttccactgctgttttccgcggaaa
atgcccttcgggaagatggatcccagctgcaccttcggcttctatgccggcgggacggag
ctggagcagctctggggggacctggcccgggtgctggcccccccctcggctccggagcgt
tatcccatcttcacgctggccgagggtcacgctcaggaccaagccctggacacccccccg
gggccgcccccttccctgccccgccgggggaaacgccccaaaaaacccaattccgacgag
ttcgttttcctctga
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