Aphelocoma coerulescens (scrub jay): 138100216 Help Entry 138100216         CDS       T10543                                  Symbol XAB2 Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism acoe  Aphelocoma coerulescens (scrub jay) Pathway acoe03040   Spliceosome Brite KEGG Orthology (KO) [BR:acoe00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     138100216 (XAB2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:acoe03019]     138100216 (XAB2)    03041 Spliceosome [BR:acoe03041]     138100216 (XAB2) Messenger RNA biogenesis [BR:acoe03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      138100216 (XAB2) Spliceosome [BR:acoe03041]  Complex B   Other components    Prp19-related factors     138100216 (XAB2)  Complex C     138100216 (XAB2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 TPR_19 TPR_12 Suf TPR_8 TPR_2 TPR_15 TPR_7 TPR_16 PPR TPR_18 ARM_TT21_C TPR_1 TPR_9 Motif Other DBs NCBI-GeneID:  138100216 NCBI-ProteinID:  XP_068854092 LinkDB All DBs Position 30:complement(1681761..1711082) Genome browser AA seq 916 aa AA seqDB search MAAAEAEMAEREEPPGAAPGAGLGLEQEPEPGPGAVAEPELGAGSGAEPGAGPGAVADPG AVADPGAVADPGAGPGPERPELCFEDEEVQHEEELLRNPFSVRGWLRYAQARQRGPRPRL NQIYERALRELPGSYKLWYQYLRQRRAQVKGRCPSDPAFEEANAVHERALVFMHKMPRIW LDYCQFLAEQGRITRTRRTFDRALRALPITQHRRLWPQYLSFVRKHPLPETAVRVFRRFL KLCPEEAEQYVAYLRSVGRLDEAAQVLARLVNDERFVSREGKSNYQLWQELCELLSQHPD RVRSLDAGGIIRGGLTRFTDQRGRLWGALADCYVRCGHLEKARDVYEEAVQTVMTVRDFT QVFDSYARFEESVIGALLDTQAQLGRGQDEEVELELRLARFERLMARRPLLLNSVLLRQN PHNVHEWHKRVALHQGHPDKIIQTFTEAVRTVDPQRATGRPHELWVAFARFYEDNGQLED ARSILARATRVRFRRVEDLAAVWCEFGELELRHQRHQEALRVLRKATALPAKRAEYFDSS EPVQNRLYKSLKVWSMLADLEESLGTFQSTRAVYERILDLRIATPQIVINYALLLEEHGR FEDSFKAYERGIALFRWPHVGDLWLTYLSKFVARYGGRKLERARDLFEQALDGCPPQHAK TIYLLYARLEEQFGLARRAMAVYERGTRAVPPAQQRDMFHIYIRRAAELFGVTHTRPIYQ RAIEVLGDDAARELCLRFADMECKLGEVDRARAIYTYCSQICDPRITGSFWQTWKEFEIR HGNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGLDEMKLLE QRAEALAAEAQRDTPRPTQQVLFVRAEAPPGAEPTLSQQGNPEEIDLGEDEGDEPDEVQL EQKQVPSSVFGGLKDD NT seq 2751 nt NT seq  +upstreamnt  +downstreamnt atggcagcagccgaggccgagatggcggagcgggaggagccgccgggagcggcgccggga gcggggctcggcctggagcaggagccggagccgggacctggagcagtggcggaaccggag ctcggggcggggtcgggagcggagccgggagcggggcccggcgcggtggcggatcccgga gcggtggcggatcccggagcggtggcggatcccggagcggggccgggcccggaacggccc gagctgtgctttgaggacgaggaggtgcagcacgaggaggagctgctcaggaaccccttc tcggtgcggggctggctccgttacgcccaggcccggcagcgcgggccccggccccgcctc aaccagatctacgagagggccctgagggagctgcccggcagttacaagctgtggtaccag tacctgcggcagcgccgggcacaggtcaaagggcgctgcccctcggaccccgccttcgag gaggccaacgccgtccacgagagagccctggtgttcatgcacaagatgccgcggatctgg ctggattactgccagttcctggcggagcagggccgcatcacgcgcacgcgccgcaccttc gaccgggcgctgcgggcactgcccatcacccagcaccggcgcctgtggccgcagtacctg agcttcgtccggaaacaccccctgcccgagaccgccgtgcgcgtcttccgccgcttcctc aagctgtgccccgaggaggccgagcagtacgtggcctacctgcgctccgtgggccgcctg gacgaggccgcgcaggtcctggcccggctggtgaacgacgagcgcttcgtgtcccgggag ggcaaatccaactaccagctgtggcaggagctgtgcgagctgctgtcccagcaccccgac cgcgtgcgctcgctggacgccgggggcatcatccggggcggcctcacgcgcttcacggac cagcgcgggcggctctggggggcactggccgactgctacgtgcgctgcggccacctcgag aaggcccgggatgtgtacgaggaggccgtgcagaccgtgatgaccgtgcgggatttcacg caggtgttcgacagctacgcccgcttcgaggagagcgtcatcggggccctgctggacacg caggcccagctgggacggggccaggacgaggaggtggagctggagctgcgcctggcgcgc ttcgagcgcctcatggcgcggcggccgctgctgctcaacagcgtcctcctgcggcagaac ccccacaacgtccacgagtggcacaagagggtggccctgcaccaggggcaccccgacaag atcatccagacgttcaccgaggccgttcgcaccgtggatccccagcgcgccaccggccgc ccccacgagctctgggtggccttcgcccgcttctacgaggacaacgggcagctggaggac gcccggtccatcctggcgcgggccacgcgggtgcggttccggcgcgtcgaggacctggcc gcggtgtggtgcgagttcggggagctggagctgcggcaccagcggcaccaggaggctctg cgggtgctgcggaaagccacggcgctgccggccaagcgcgccgagtacttcgacagctcg gagcccgtccagaaccggctctacaaatccctcaaggtgtggtccatgctggccgacctg gaggagagcctgggcaccttccagtcgacgcgggcggtctacgagcgcatcctggacctg cgcatcgccaccccccagatcgtcatcaactacgcactgctgctcgaggagcacgggcgc ttcgaggacagcttcaaggcgtacgagcgcggcatcgcgctgttccggtggccgcacgtg ggggacctgtggctcacgtacctgtccaagttcgtggcccgttacgggggccggaagctg gagcgggcgcgggacctcttcgagcaggcgctggacgggtgccccccgcagcacgccaag accatctacctgctgtacgcccgcctggaggagcagttcgggctggctcgcagggccatg gccgtgtacgagaggggcacgcgggcagtgccccccgcccagcagcgggacatgttccac atctacatccgccgggcagccgagctcttcggggtcacccacacgcggcccatctaccag agagccatcgaggtgctgggggacgacgcggcgcgggagctgtgcctgcgcttcgccgac atggagtgcaaactgggagaggtggaccgggcccgcgccatctacacctactgctcccag atctgcgacccccggatcacgggcagcttctggcagacgtggaaggagtttgagatccgg cacgggaatgaggacacgatccgcgagatgctgcggatcaagcgcagcgtgcaggccacc tacaacacccaggtgaacttcatggcctcgcagatgctcaaggtgtccggcagcgccacc ggcacagtgtcagacctggccccgggccagagcggcctggacgagatgaagctgctggag cagcgcgcggaggcgctggcggccgaggcccagcgggacacgccccgccccacccagcag gtgctgttcgtcagggccgaggcccccccgggggcagagcccaccctgtcccagcagggg aaccccgaggagatcgacctgggcgaggacgagggcgacgagcccgacgaggtgcagctg gagcagaagcaggtcccgtcctccgtgttcggggggctcaaggacgactga

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