Aphelocoma coerulescens (scrub jay): 138100413
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Entry
138100413 CDS
T10543
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
acoe01009
]
138100413 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138100413 (HDAC6)
04131 Membrane trafficking [BR:
acoe04131
]
138100413 (HDAC6)
03036 Chromosome and associated proteins [BR:
acoe03036
]
138100413 (HDAC6)
Enzymes [BR:
acoe01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
138100413 (HDAC6)
Protein phosphatases and associated proteins [BR:
acoe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138100413 (HDAC6)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
138100413 (HDAC6)
Membrane trafficking [BR:
acoe04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
138100413 (HDAC6)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
138100413 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
DNA_pol_phi
SDA1_dom
CDC45
Motif
Other DBs
NCBI-GeneID:
138100413
NCBI-ProteinID:
XP_068854352
LinkDB
All DBs
Position
31:85136..105500
Genome browser
AA seq
975 aa
AA seq
DB search
MGRAGRRLPQQGALCQARRRGRARGRRAGLEAELQQLDLGAEAAAPTGTGLVSDGGNGGD
GGDGRPPRGPAPLWAALEGLVQRCVRVQCRPATDEELLLVHSPSFVAQLEPPDGPAPGGS
GPRWAVGAALALLEQVLGGALRNGVALISPQDPQDPQDPPEAAAVAARVAQKQLGVQRVL
IVDWSPRPGRSLPRLFQEDPSVLYFGAQRGRDPPPSPGHGPGEGFSVELQWEQPGVTDGD
YAAAAFHVLLPIAFQFQPQLVLVEASLEDLGGSLGVSPAGFALLTHLLMALGRGRLLLLL
QGGPDLGASPGGVGAVLQTLLGDPGDPLGPISPTPSGLASIARTLSVHQQYWGCLQSIEI
EEEEEDEEEEDEEEEEEEEEVEVEAGEEENEEEEKEELEGDGNPPETTPETPPEAPTRPR
VGLVYDPRMEEHRNTWDSQHPESPQRLSRVLQRLQELGLAQRCLRVPPRPATPRELRACH
TRAHVRTLSRTPALSPRELRALSQRYNSLYLCPRSYSCARLAAGGACAAAGAVLGGQVRS
ALAVLRPPGHHARPGSAGGFCLFNNVGVAARHAQRLAGTPLRVLILDWDVHHGNGTQEIF
EEDPSVLYVSLHRHDGSFFPGGAGGSPRRRGRGPGTGFTLNVGWGGPRVGDPEYLAALTR
LVLPVACQFGPELVLVSAGFDAGRGDPLGGCLVSPQTFGLMTHLLGGLAGGRLVLVLEGG
YNLGVTAEGVGQCLGVLLGDPPSLPPPGTPQPAALRALSRTLRAQRGCWSCLRLPRVEPP
PAAPRKEGSDDVTPAADDVTGSAPLDAAIRRMGALQLGDAPGGGAKAAPGEEPLPGPAPT
GAAAAAPCWEEEEELEEGALYAVTPLLDCPHLGAVAPPPAGGALGDILPPPCGVCGSRRE
NWLCLSCHQVLCGRYVGRHMLEHGAASGHPLVLSLRDLAAWCYPCGGYVTHPVLLPTKTF
IYRLKFGTDPPTPSF
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgcggggcggcggctcccccagcagggggcgctgtgccaggcgcggcggcgc
gggcgcgcgcggggccggagggcggggctggaggcggagctgcagcagctggatttgggg
gcggaagctgcagctcccaccgggaccggactggtcagcgatggagggaacggaggcgat
ggcggggacggccgcccccccaggggtccggccccgctctgggcagcgctggaggggctg
gtccagcgctgtgtccgtgtgcagtgccgcccggccaccgacgaggagctgctgctggtg
cacagcccctcgttcgtggcgcagctggagccccccgacggccccgccccgggggggtcg
gggccccgctgggccgtgggggccgcactggcgctgctggagcaggtcctggggggggcc
ctgcgcaatggggtggccctgatcagcccccaggacccccaggacccccaggaccccccc
gaagccgcggccgtggccgcccgggtggcccagaagcagctcggggtgcagcgtgtcctg
atcgtggattggagcccccggcccggccggagcctccctcggctgttccaggaggatccc
agtgtcctgtattttggggcgcagcggggccgggaccccccccccagccccggccacggc
cccggggaggggttcagcgtggagctgcagtgggaacagcccggtgtcaccgatggcgat
tacgcggccgccgccttccacgtcctgctgcccatcgccttccagttccagccccagctc
gtcctggtcgaggcttcgcttgaggatttgggggggtctctgggggtctcccctgccggc
tttgctctcctgacccacctgctcatggccttgggcagggggcggctgctgctgctgctg
cagggggggccggacttgggggcgtccccggggggggtgggggccgtcctgcagacactg
ctgggggaccctggggaccccctcgggcccatcagccccacccccagcggcctggccagc
attgcccgcaccctgagcgtccaccagcagtactggggctgcctgcagagcatcgagatc
gaggaggaggaagaggatgaggaggaggaggatgaggaggaagaggaggaggaagaggaa
gtagaggtggaagcaggggaggaagagaatgaggaggaggagaaggaggagctggagggg
gatgggaaccccccagagaccaccccggagacccccccggaggccccgacgagaccccgg
gtggggctggtgtatgacccccgcatggaggagcacaggaacacctgggacagccagcac
cccgagtccccgcagcgcctgtcccgggtgctgcagcggctgcaggagctggggctggcc
cagcgctgcctccgggtgcccccccggcccgcgaccccccgagagctccgtgcctgccac
acccgggcccacgtgcggacgctgtcccggacgccggcgctgtcgccgcgggagctgcgg
gcgctgtcgcagcgctacaacagcctctacctgtgcccccgctcgtacagctgcgcccgc
ctggccgcggggggggcctgcgccgccgcgggggccgtgctgggcgggcaggtgcgctcg
gccctggccgtgctgcgcccccccggccaccacgcccgcccgggctctgccgggggcttc
tgcctcttcaacaacgtgggggtggccgcgcgccacgcccagcgcctggccgggaccccc
ctcagggtgctgatcctggactgggacgttcaccacggcaacggcacccaggagatcttc
gaggaggaccccagtgtcctgtacgtgtccctgcaccgccacgacggctccttcttcccg
gggggggccggggggtccccgcggcgccgggggaggggtcctggcaccggcttcaccctg
aacgtggggtggggggggccccgcgtgggggaccccgagtacctggcggccctgacccgg
ctggtgctgcccgtggcctgccagttcgggccggagctggtgctggtgtcggccgggttc
gacgcgggccggggggaccccctgggggggtgcctggtgtccccccagaccttcggcctc
atgacccatctgctgggggggctggcgggggggcggctcgtgctcgtgctcgagggcggg
tacaacctgggggtgacggcggagggggtggggcagtgcctgggggtcctgctcggggac
cccccctcgctgcccccccccggcaccccccagcccgcggcgctgagggccctgagccgc
accctgcgcgcccagcggggctgctggagctgcctgcggctgccccgggttgagcccccc
ccggcggcccccaggaaggaaggcagcgatgacgtcacaccagccgccgatgacgtcacg
gggtctgcccccttggacgccgccattcgccgcatgggggcgctgcagctcggggacgcc
ccggggggcggggccaaggcggccccgggggaggagcctctgccaggccccgcccccacg
ggagcggccgctgccgccccctgctgggaggaggaggaagagctggaggagggggcgctg
tacgccgtgacgcccctcctggactgtccccacctgggggccgtggccccgcccccggcc
gggggggcccttggggacatcctgccccccccctgcggggtctgcgggagccgccgcgag
aactggctgtgcctcagctgccaccaggtgctgtgcgggcgctacgtggggcggcacatg
ctggagcacggcgcggcctcggggcaccccctggtgctgagcctgcgggacctggcggcc
tggtgctacccctgcgggggctacgtcacccacccggtgctgctccccaccaagaccttc
atctaccgcctcaaattcggcactgacccccccaccccctccttctga
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