Aphelocoma coerulescens (scrub jay): 138100473
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Entry
138100473 CDS
T10543
Symbol
LRFN1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
acoe04515
]
138100473 (LRFN1)
04990 Domain-containing proteins not elsewhere classified [BR:
acoe04990
]
138100473 (LRFN1)
Cell adhesion molecules [BR:
acoe04515
]
Immunoglobulin superfamily
SALM family
138100473 (LRFN1)
Domain-containing proteins not elsewhere classified [BR:
acoe04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
138100473 (LRFN1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
ig
fn3
Ig_2
LRR_9
Ig_DSCAM-DSCAML_C
DUF2866
Motif
Other DBs
NCBI-GeneID:
138100473
NCBI-ProteinID:
XP_068854417
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All DBs
Position
34:801173..805535
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AA seq
686 aa
AA seq
DB search
MGYGSFCWDPMGPGAGICRDLFGSVGLHHPPCPPAGAAVGMAKLLVPLVVLGAVSGAGVP
VSPPSPRCPPRCLCPAAAPSPTLLCARTGLLAVPPSLDRGAVELRLADNFIGAVGRSDFA
NMSSLVHLTLSRNGLRRLAPGAFADLRALRALHLDGNRLPALSGPQLRGLASLRHLILAN
NQLATIDAAAFAAFAATVEDLDLSHNNLPALPWDAVAAMGSLATLTLDHNLLERVPAGAV
ARLPRLARLDLTANRLRALPPVPGPPGPALAAGGNPLHCNCELLWLRRVAQPGRLETCAT
PAPLAGRLLGAVPEEELTCRAPAVTAAAAHPPAVTEGQPLRLGCAAVGDPPPALHWLGPD
GRVVQNGSRRLVGADGSLELRVATLRDHGGFTCVAANAAGEAAARVDVVVVPLPVPRGRD
GDGDAAAAEAGPGPSDMAQAGGNDTWGGPGERRVVAAEVTGSSARIRWLPQRHVPGVRMV
QIQYNSSADDALVYRLLPPSSRTFVLRDLAPGRLYELCVSALRVVGDPPAAPRSLGCVSF
ATAAAPPGCAAPPRPHFLGGTVIIVIGAAIAASVLVFILILTARWKAAGARRPPPALTSV
CSQTNGGPRPAETPELPPLPPLPPPAGGGPAAGGARGLFPSHSYPRRARPRRHGSLPRLD
APEGSPLGPPLRPSFGSTHWMLESTV
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggatacggcagcttctgttgggatcccatggggcctggtgctgggatctgccgggat
ctttttggatctgtcgggctccaccaccccccttgtccccctgcaggcgcggccgtgggg
atggcgaagctgctggtgccgctggtggtgctgggggccgtgtccggcgcgggggtcccg
gtgtcgccgccatcgccgcggtgtcccccgcgttgcctgtgccccgcggccgcgcccagc
ccgactctgctgtgcgcccgcacggggctgctggcggtgccgcccagcctggaccgaggc
gccgtggagctgcgcctggccgacaacttcatcggcgccgtgggccgctccgacttcgcc
aacatgagcagcctggtgcacctgacgttgtcacggaacgggctccgccgcctcgccccc
ggcgccttcgccgacctgcgcgcgctgcgggcgctgcacctggacgggaaccggctgccg
gcgctgagcgggccgcagctgcgcgggctggccagcctgcgccacctcatcctggccaac
aaccagctggccaccatcgatgctgccgccttcgccgccttcgccgccaccgtggaggac
ctagacctgtcgcacaacaacctcccagcgctgccctgggacgctgtggccgccatgggc
agcctggccacgctgacgctggaccacaacctgctggagcgggtgccggccggcgccgtg
gcgcggctgccgcgcctggccaggctggacctcacggccaaccggctgcgggcgctgccg
ccggtgccggggccgccggggccggcgctggcagccggggggaaccctctgcactgcaac
tgcgaattgctgtggctgcgccgcgtggcccagccgggccgcctggagacctgcgcgaca
ccggcgccgctggccgggcggctgctgggcgccgtgcccgaggaggagctgacctgccgg
gcccccgctgtcaccgcagcggctgcgcacccgcccgcggtcaccgaggggcagccgctg
cgcctgggctgcgccgccgtcggggacccgccgcccgcgctgcactggctgggccccgac
gggcgtgtggtgcagaacggctcccggcgcttggtgggcgccgacggctccctggagctc
cgcgtggccacgctgagggaccacggcggcttcacctgcgtggccgccaacgccgctggc
gaggcagccgcgcgtgtcgacgttgtggtggtgccgctgccggtgccgcggggacgggat
ggggatggtgatgccgcggccgccgaggcagggcccggcccctcggatatggcccaggcg
ggcggcaatgacacctggggggggcctggggagcggcgggtggtggcagcggaggtgacg
gggtcctcggcgcgcatccggtggctgccacagcgccacgtgcccggcgtgcgcatggtg
cagatccagtacaacagctcagccgacgacgccctcgtttacaggttgttgcccccctcc
agccgcaccttcgtgctgcgggacttggcccccgggcgcctgtacgagctctgcgtgtcc
gcgctgcgcgtggtcggggacccccccgccgccccccgctcgctcggctgcgtctccttc
gccacggccgccgcccccccgggctgcgccgcgcccccccggccccacttcttggggggc
accgtcatcatcgtcatcggcgccgccatcgccgcctccgtgctcgtctttatcctcatc
cttacggcgcgctggaaggcggcgggggcgcggcgccccccgcccgcgctcaccagcgtc
tgctcgcagaccaacggcggtccccggcccgccgagacccccgagctgcccccgctgcct
ccgctgcccccgcccgcgggcgggggtcccgcggcggggggggcgcgggggttgttcccc
agccacagctacccccggcgggcgcggccccggcgccacgggtccctcccgcggctggac
gcgcccgaggggagccccctggggcctcccctgcgcccctcgttcggcagcacccactgg
atgctggagagcacggtgtga
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