Aphelocoma coerulescens (scrub jay): 138100490
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Entry
138100490 CDS
T10543
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03250
Viral life cycle - HIV-1
Brite
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
138100490 (SUPT5H)
RNA polymerase I system
138100490 (SUPT5H)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
138100490 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138100490
NCBI-ProteinID:
XP_068854443
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Position
34:complement(775160..785384)
Genome browser
AA seq
1084 aa
AA seq
DB search
MSDSEDSNFSEDESERSSDDGDDNEAEEQRGGGSGKEEAEEEEEEEEEEEEEEEYDEEEE
EEEDDDRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDED
RSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAVALMRKFIAYQYTETPLQIKAVVAPEHVRGYLYVEAYKQTHVKQA
IEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVTNLKPKAWVRLKRGIYKDDIAQVDYVEP
SQNQISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDF
LIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREH
NFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFRMGDHV
KVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGE
LVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFA
VCGFTPMSPRISSPMHPSGAGQRGGFGAGGLSRGRGRRDNDLIGQTVRISQGPYKGYIGV
VKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGLTSAYGRTPMYGSQTPMYGSGSR
TPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFEDE
PTPSPQGYGGTPNPQTPGYPDPASPQVSQPYNPQTPGTPAMYNTEQFSPYAVPSPQGSYQ
PSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGY
NPHTPGSGIEPSAGDWVTTDIQVKVRDSYLDSAAVGQTGVIRSVTGGMCSVYLKDSEKVV
SVSSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLEEQLKILNLRFLGK
LLEA
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggacagcaacttctcggaggacgagagcgaacgcagcagcgacgac
ggcgacgacaacgaggccgaggagcagcgcggggggggcagcgggaaggaggaggcggag
gaggaggaggaagaagaagaggaggaggaggaggaggaggagtacgatgaggaggaggag
gaggaggaagacgacgatcgcccggccaagaaaccgcggcacggggggttcatcctggat
gaggctgatgtggatgatgagtacgaggatgaagatcagtgggaggatggggctgaggac
atcctggagaaagaggagatagaagcttccaacattgacaacgtggtgctggacgaggat
cgctcgggagcacggcggctccagaacctctggagggaccagcgggaggaggagctgggc
gagtactacatgaagaaatacgccaagtcctcggtgggggagacagtttatggcggctcc
gatgagctctcagatgacatcacccagcagcagctgctgcccggcgtcaaggaccccaat
ctctggacggtcaagtgcaagatcggggaggagcgtgccacggccgtcgccctcatgcgc
aagttcatcgcctaccagtacacggagacgcccctgcagatcaaggcggtggtggccccc
gagcacgtgcgcggctacctgtacgtcgaggcctacaagcagacccacgtcaagcaggcc
attgagggcgtgggcaacctgcgcctgggctactggaaccagcagatggtgcccatcaag
gagatgactgatgtgctcaaggtggtcaaggaggtcaccaacctcaagcccaaggcctgg
gtgcgcctcaagaggggcatctacaaggatgacatcgcccaggtggattacgtggagccc
agccagaaccagatctctctcaaaatgatccccaggattgacttcgaccggatcaaagcc
cggatgagcctgaaggactggttcgccaagcgcaagaagttcaagcggccgccccagcgc
ctcttcgacgccgagaagatccggtccctgggcggggacgtggcctcagatggcgacttc
ctgatcttcgagggcaaccgctacagccggaaggggttcctgttcaagagcttcgccatg
tcggccgtgatcaccgagggggtcaaacccaccctgtccgagctggagaaattcgaggac
cagcccgagggcatcgacttggaagtggtgaccgagagcaccggaaaagagcgggaacac
aacttccagccaggggacaacgtggaggtgtgcgagggtgagctcatcaacctgcagggc
aaaatcctcagcgtggatggcaacaagatcaccatcatgcccaagcacgaggacctcaag
gatatgctggagttcccggcgcaggagctgaggaaatacttcaggatgggcgaccacgtg
aaggtgatcgctgggcgcttcgagggtgacaccgggctcatcgtcagggtggaggagaac
ttcgtgatcctgttctctgacctgaccatgcacgagctgaaggtgctaccccgggatctg
cagctctgctccgagacggcctcgggagtggatgtgggggggcagcacgagtggggggag
ctggtgcagctggacccccaaaccgtgggggtcatcgtgcggctggagcgggaaaccttc
caggtgctgaacatgtacgggaaggtggtgacggtgcggcaccaggccgtcaccaggaag
aaggacaatcgcttcgccgtggcgctggactcggagcagaacaacatccacgtcaaggac
atcgtcaaagtcatcgacggcccccactccggccgtgagggtgaaatccgccacctcttc
cggggcttcgccttcctgcactgcaagaagctggtggagaatggggggatgttcgtctgc
aagacgcggcacctggtgctggccgggggctccaagccccgtgatgtcaccaacttcgcc
gtgtgcggcttcacaccgatgtccccccgcatcagcagccccatgcaccccagtggggcc
ggccagaggggcggttttggggccggggggctgagccggggccgtggccggcgcgacaac
gacctcatcggacagacggtgcggatctcacaggggccctacaaagggtacatcggggtg
gtcaaggatgccacggagtcaacggcgcgagtggagctgcactcgacctgccagaccatc
tcggtggacaggcagcgactgaccactgtggggtcccggcgccctgggggtctcacctcg
gcctacgggaggaccccgatgtacggatcccaaacccccatgtacggctcggggtcccgc
acgcccatgtacggctcgcagaccccgctgcacgacgggagccgcaccccccactatggg
tctcagacccccctgcatgatgggagccggaccccggcccagagcggggcctgggacccc
aacaaccccaacaccccctcgagggcggacgaggacttcgagtacggctttgaggacgag
cccaccccgtccccgcagggctacgggggcaccccgaacccccaaaccccggggtacccc
gaccctgcatccccacaagtcagccagccctacaacccccagacccctggcacgcctgcc
atgtacaacacggagcagttctcgccctacgccgtcccctccccccagggctcataccag
cccagcccctccccccagagctaccatcaggtggccccgagccccgtgggctaccagaac
acgcactcgccggccagctaccaccccacgccgtcccccatggcctaccaggccagcccc
agccccagcccggtgggctacagcccgatgaccccgggggctccgtccccgggtgggtac
aacccccacacccccggctcgggcatcgagcccagcgcgggcgactgggtgaccacggac
atccaggtcaaggtgcgggactcgtacctggacagcgcggccgtggggcagaccggggtc
atccgcagtgtcacgggcgggatgtgctctgtgtacctgaaggacagcgagaaggtggtc
agcgtgtccagcgagcacctggagcctgtcacgcccaccaagagcaacaaggtgaaggtg
atcctgggcgaggaccgcgaggcaaccgggatcctgctgagcatcgacggcgaggacggg
atcgtgcgcatggacctggaggagcagctcaagatcctcaacctgcgcttcctggggaag
ctgctcgaggcctga
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