Aphelocoma coerulescens (scrub jay): 138100605
Help
Entry
138100605 CDS
T10543
Symbol
SYMPK
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
KO
K06100
symplekin
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03015
mRNA surveillance pathway
acoe04530
Tight junction
Brite
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138100605 (SYMPK)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
138100605 (SYMPK)
U7-dependent histone pre-mRNA processing factors
138100605 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
INTS7_N
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
138100605
NCBI-ProteinID:
XP_068854580
LinkDB
All DBs
Position
Unknown
AA seq
1267 aa
AA seq
DB search
MGLGEPLGIGGPGGGGGRGRRAREEGPWRGGRRGPAPAPSEEEPGSDGRSTSERVVELLN
QAALIGNEGKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVVGFIEEACK
RDIELLLKLIANLNMLLKDENVNVVKKAILTMTQLYKVALQWMVKSKVISELQEACWEMM
SSMASDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRTADSDVPKRHENDVSLERIPRDHP
VIKYNALWEEGKAALEQLLKFMVHPAISSINLTAALGSLATIARQRPMFMAEVIQAYETL
HANLPPTLAKSQVSSVRKNLKLHLLSVLRHPSSGDFQPQITTLLVDLGTPQAEIARSMPS
PREARKRPRDEPDAALKKMKIEPPLGEDDEDKDLEAPAVAVAKVAGAANVPSDTDITAEF
LQPLLTPENVANLVLISMVYLPEAMPASFQATYTPVESAGTEAQIKHLARLMATQMTAAG
LGPGVEQTKLLREEPKEEKAAKPDGVVIKRRLSALGQGQAIAVLGAHGSAGGLLDETPQA
KRRPEPIIPATQPRLAGAGGRKKVFRLSDVLKPLSDVQVEKLKLGAVRRILRSERAVAAS
GAAQARVKILASLVTQFEVPLKSEVLSFILDDVRGRLDLAFAWLFQEYNAHLARGGAGGL
ERYDECLIGLLAGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTL
RDLIFKRPSRQFQYLHVLLDLSSHEKDKVRQQALLFIKRMYEKEQLREYVEKFALNYLQL
LVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTEAIADI
KRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRE
LYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGDGASAVSP
LNPGELLIALHNIDSAKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLM
RTVIQALTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVVLQLPPP
QLAAVFEKCPELREPLLSHVRALTPHQQAHIPLSTMAILEATTRHEPAGTPGEEKPPKRP
SEEDPKPKGAPPAPGGGPSSGSSPSEPPPADLGGGGDLEPPSIFISVPEDEESSGGDVSP
PAPASLDPPTAPPKDPPAGPEPPPAVPPTTEGPPSSPPSSEPPPPGTQSPEVPPGGVPEV
APGPAEG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgggggagcccctcgggattggggggcccgggggagggggggggagggggcgg
cgagcgcgggaggaggggccatggcgggggggcaggaggggcccagcccccgcgccgagc
gaggaggagcccgggagcgacgggaggagcacctcggaacgggtggtggagctgctgaac
caggcggcgctgatcgggaacgaggggaaaatcaccgtcctaaagcaggtgcaggagctg
atcatcaacaaggaccccacgctgctcgacaacttcctggatgaaatcatcgccttccag
gccgacaaatccatcgaggttcggaaattcgtggtggggttcatcgaggaggcctgcaaa
agggacatcgagctgctgctgaagctcatcgccaacctgaacatgctgctcaaggacgag
aacgtcaacgtggtcaaaaaggccatcctgaccatgacccagctctacaaggtggccctg
cagtggatggtgaagtccaaggtgatcagcgagctgcaggaggcctgctgggagatgatg
tcctccatggccagcgacatcatcctgctgctggactcggacaacgacggcatccgcacc
cacgccatcaagttcgtggaggggctcattgtcacgctgtccccgcgcacggccgactcc
gacgtccccaagcgccacgagaacgacgtcagcctggagcgcatcccgcgggatcacccc
gtcatcaagtacaacgcgctgtgggaggagggcaaggcggcgctggagcagctgctcaag
ttcatggtgcacccggccatctccagcatcaacctgacggccgcgctgggctcgctggcc
accatcgcccgccagcggcccatgttcatggccgaggtcatccaggcctacgagaccctg
cacgccaacctgcccccgacgctagccaagtcccaggtgagcagcgtgcgcaagaacctg
aagctgcacctgctgagcgtcctgcggcacccgtcctcgggcgacttccagccgcagatc
accacgctgctggtggacctgggcacgccgcaggccgagatcgcccgcagcatgcccagc
ccccgcgaggcccgcaagcgcccgcgcgacgagcccgacgccgccctcaagaagatgaag
atcgagcccccgctgggcgaggacgacgaggacaaggacctggaggcgcccgcggtggcc
gtggccaaagtggccggcgcggccaacgtcccctcggacaccgacatcacggccgagttc
ctgcagccgctgctgacccccgagaacgtggccaacctggtgctgatcagcatggtgtac
ctgcccgaggccatgcccgcgtccttccaggccacctacacgcccgtggagtcggccggc
accgaggcgcagatcaagcacctggctcgcctcatggccacccagatgaccgcggccggc
ctcgggccaggcgtggagcagaccaagctgctgcgggaggagcccaaggaggagaaggcg
gccaagccggacggagtggtcatcaagcggcgcctgtcggccctgggccagggccaggcc
atcgccgtgctgggtgcccacggctcggccggggggctgctggacgagaccccccaggcc
aagcgccggcccgagcccatcatcccggccacgcagccgcggctggcgggggccgggggt
cgcaagaaggttttccgcctcagcgatgtcctgaagccgctcagcgatgtccaggtggag
aagctcaagctcggcgccgtccggcgcatcctgcgctccgagagggccgtggccgccagc
ggggccgcccaggcccgtgtgaagatcctggcctcgctggtgacgcagttcgaggtgccc
ctcaagagcgaggtgctctccttcatcctggacgacgtccggggccgcctggacttggcc
ttcgcgtggctcttccaggagtacaacgcccacctggcccgcggcggcgccggcggcctc
gagcgctacgacgagtgcctcatcgggctactggccgggctgcaggagaagcccgaccag
aaggacggaattttcaccaaagtggtgctggaggcgccgctcatcaccgagagcgcgctc
gaggtcatccgcaagtactgcgaggacgagagccgcacctacctgggcatgtccaccctg
cgcgacctcatcttcaagcggccgtcgcggcagttccagtacctgcacgtgctgctggac
ctgagctcccacgagaaggacaaggtgaggcagcaggcgctgctgttcatcaagcgcatg
tacgagaaggagcagctccgcgagtacgtggagaagttcgccctcaactacctgcagctg
ctggtgcaccccaacccgccctcggtgctcttcggcgccgacaaggacacggaggtggcg
gcgccctggaccgaggagaccatcaagcagtgcctgtacctgtacctggccctgctgccc
cacaaccacaaactcatccacgagctcgcctccgtctacaccgaggccatcgccgacatc
aagcgcacggtgctgcgcgtcatcgagcagccgatccgcgggatgggcatgaactcgccg
gagctgctgctgctggtggagaactgccccaagggcgccgagactttggtgacgcgctgc
ctgcacagcctgaccgacaaagtgccgccctcgccggagctggtgaagagggtgcgggag
ctctaccacaagcggctgccggacgtgcggttcctcatccccgtcctgaacgggctggag
aagaaagaggtgattcaggcgctgcccaaactcatcaagctcaaccccatcgtggtcaag
gaggtgttcaaccgcctgctggggacgcagcacggtgacggcgcctcggccgtgtccccc
ctgaaccccggggagctcctgatcgccctgcacaacatcgactcggccaagtgcgacatg
aaatccatcatcaaagccaccaacctgtgcttcgcggagcgcaacgtgtacacgtcggag
gtgctggcggtggtgatgcagcagctgatggagcagagcccgctgccgatgctgctgatg
cgcacggtcatccaggcgctgaccatgtacccccgcctgggcggcttcgtcatgaacatc
ctgtcccgccttatcatgaagcaggtgtggaagtaccccaaggtgtgggaagggttcatc
aagtgctgccagcgcacgaagccccagtccttccaggtggtcctgcagctgcccccgccc
cagctcgccgccgtcttcgagaagtgtccggagctccgcgagcccctcctgagccacgtc
cgagccctcaccccacaccagcaagcgcacatcccgctgtccaccatggccatcctggag
gccaccacgcgccacgagcccgcggggacacctggagaggagaagccccccaaacgtccg
agcgaggaagaccccaaacccaagggggcccccccagccccgggggggggtcccagctca
ggctcctccccctccgagcccccccccgcggacctggggggagggggtgacctggagccc
ccctccatcttcatcagcgtccccgaggatgaggagagctcggggggggacgtctccccc
cccgcccctgcctccctcgacccccccacggcccccccaaaggacccccccgcgggcccg
gagccccccccggccgtgccccccaccaccgagggcccccccagcagccccccctcgtcg
gagccgcccccccccggcacccagagccccgaggtgcccccggggggggtccctgaggtc
gcccccggccccgccgagggctga
DBGET
integrated database retrieval system
