Aphelocoma coerulescens (scrub jay): 138100739
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Entry
138100739 CDS
T10543
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138100739 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acoe03041
]
138100739 (DHX16)
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138100739 (DHX16)
Spliceosome [BR:
acoe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138100739 (DHX16)
Complex C
U4/U6.U5 tri-SnRNP related factors
138100739 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
Flavi_DEAD
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
138100739
NCBI-ProteinID:
XP_068854704
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MAALERWVSGQLQELLGLSARHVPAFLVALARRSRSLEELLERLRETEALRVEEPRVREF
ASQLWEKVPREAPREPPGRAAERAALELQRQNRGYRLVESDEEGPGPAQDHTQDEPRPRR
RHLRRRRRSESPPEAAAASPSPPPAAEPREEPEEEWEASERERLRDLQERDAFAERLRRR
DRERDRGARSNNKAYEEAQKRLKIAEEDQKAMIPELRKRSRREYLAKREREKLEELELEI
QDEELLFGEDSLSAPELRELRYKRRVRDLAREYKRAGDREQLERSSRYHIPEETRGKKIP
EREEPGAEEPLAPRDEQRRWEEQLLGAASLRFGARDAALRQRPRDYELLLEEDEMVQFVS
AAQLEGTDPQKDVPEAVPEAERRRQSLQDSRRSLPIFPFRAELVAAVAQHQILVIEGETG
SGKTTQIPQYLHEEGYTRGGLRIGVTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFED
CTSERTVLKYMTDGMLLREFLTEPDLASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQ
LKVLVASATLDTERFSAFFDHAPVFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVT
QPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQARIFQPTPP
GARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRASANQRAGR
AGRVAPGKCFRLYTAWAFQHELEETPVPEIQRADLGSLVLLLKSLGINDLIHFDFLDPPP
HETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAA
MLSVNNAVFYRPKDKVLHADSARVAFSVPGGDHLVLLNVYNQWVASGHSLQWCYEHFVQA
RSLRRARDVRDQLQGLMERVEIAPSSCGANLDLVRKAITAGFFYHTARLARGGYRTVKHQ
QPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQVIEIDSAWLLEVAPHYYQAKELEDGS
GRKMPKKAGKSREELG
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggccctggagcgctgggtgtccgggcagctgcaggagctgctgggcctcagcgcc
cgccacgtccccgctttcctggtggcgctggcgcggcggagccgcagcctggaggagctg
ctggagcggctgcgcgagaccgaggccctgcgcgtggaggagccgcgcgtgcgcgagttc
gcgagccagctgtgggagaaggtgccgcgggaagccccccgggagccccccgggcgcgcg
gccgagcgggcggcgctggagctgcagcggcagaaccgcggctaccgattggtggagagc
gacgaagaggggccgggccccgcccaggaccacacccaggatgagccacgcccacgccgg
cgtcacctgaggcgacggcgccgctccgagtccccccccgaggccgccgcggcgtcgccg
tcacccccgccggcggccgagccccgcgaggagccggaggaggagtgggaggcgtcggag
cgggagcggctgcgggacctgcaggagcgcgacgccttcgccgagcggctgcggcgccgc
gaccgggaacgggaccggggggctcggagcaacaacaaggcctacgaggaagcccaaaaa
cgcctcaaaatcgccgaggaagatcaaaaagccatgatccccgagctgcggaagcgctcg
cgccgcgagtacctggcgaagcgcgagcgggagaagctggaggagctggagctggagatc
caggacgaggagctgctgttcggggaggattccctgagcgcccccgagctccgggagctc
cgctacaagcgccgggttcgggacctggcccgggagtacaaacgggccggggaccgggag
cagctggagcgcagcagccgctaccacatccccgaggagacgcggggcaagaagatcccg
gagcgggaggagccgggggcggaggagccgctggcgccccgggacgagcagcggcgctgg
gaggagcagctgctgggggcggcctcgctgcgcttcggggcccgcgacgccgcgctccgg
cagcggccccgcgactacgagctgctgctggaggaggacgagatggtgcagttcgtcagc
gccgcccagctggagggcaccgacccccaaaaggacgtccccgaggccgtccccgaggcg
gagcggcgccggcagtcgctgcaggacagccgccggtcgctgcccattttccccttccgg
gccgagctggtggcggccgtggcccagcaccaaatcctcgtcatcgagggcgagacgggc
tcggggaagaccacccagatcccccagtacctgcacgaggagggctacacgcgggggggg
ctgaggatcggggtgacgcagccgcggcgcgtggccgccatgagcgtggcagcgagggtg
gccgtggagatgggcaccaagctgggcaacgaggtgggctacagcatccgcttcgaggac
tgcacgtcggagcggacggtgctcaagtacatgacggacgggatgctgctgcgcgagttc
ctcaccgagcccgacctggcctcgtacagcgtgatcatggtggacgaggcgcacgagcgg
acgctgcacacggacgtcctgttcggcctcatcaaggacatcgcgcgcttccggccgcag
ctcaaggtcctggtggcctcggccacgctggacacggagcgcttctcggccttcttcgac
cacgcgcccgtgttccgcatccccgggcggcgcttcccggtggacatctactacaccaag
gctcccgaggccgactacctggaggcctgcgtggtgtccgtgctgcagatccacgtcacc
caaccccccggggacatcctggtcttcctcaccgggcaggaggagatcgaggcgtgcgtg
gagctgctgcaggagcgctgccgccgcctgggctcgcggctgcccgagctgctggtgctg
cccatctacgccaacctcccctcggagctgcaggcccgcatcttccagcccacgcccccc
ggcgccaggaaggtggtggtggccaccaacatcgcggagacgtcggtgaccatcgacggc
atcgtgtacgtgctggaccccggcttctgcaagcagaagagctacagcgcccgcacgggc
atggagtcgctggtggtgacgccctgctcgcgggcctctgccaaccagcgcgcgggccgg
gcggggcgcgtggcgcccgggaagtgcttccggctctacacggcctgggcgttccagcac
gagctggaggagaccccggtgcccgagatccagagggccgacctgggctccctcgtgctg
ctgctcaagagcctggggatcaacgacctgatccacttcgacttcctggacccgcccccc
cacgagacgctggtgctggcgctggagcagctctacgccctgggcgccctcaaccacctg
ggagagctcaccacgctgggccggcgcatggcggagctgcccgtggagcccatgttggcc
aagatgatcctggccagcgagcagtacggctgcacggaggaggtgctgacggtggccgcc
atgctgtcggtgaacaacgccgtgttctaccggcccaaggacaaggtgctgcacgccgac
agcgcccgcgtggccttcagcgtccccggcggggaccacctggtgctgctcaacgtctac
aaccagtgggtggccagcggccactccctgcagtggtgctacgagcactttgtgcaggcg
cggtccctgcgcagggccagggacgtgcgggaccagctgcaggggctgatggagcgcgtg
gagatcgccccgtcctcgtgcggggccaacctggacctcgtccgcaaggccatcacagcc
gggttcttctaccacacggcgcggctggcgcggggcgggtaccgcacggtgaagcaccag
cagccggtgttcatccaccccaacagcgccctgttcgcgctgcagccgcgctgggtgctc
taccacgagctggtgtgcacctccaaggagttcatgcggcaggtgattgagatcgacagc
gcctggctgctggaggtggccccccactactaccaggccaaggagctcgaggacggcagc
ggccgcaagatgcccaaaaaagccggaaaatcgcgggaggagctgggctga
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integrated database retrieval system
