Aphelocoma coerulescens (scrub jay): 138100762
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Entry
138100762 CDS
T10543
Symbol
SKIC2
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138100762 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138100762 (SKIC2)
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138100762 (SKIC2)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
138100762 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
138100762 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
HTH_Tnp_ISL3
MTR4-like_stalk
AAA_16
Motif
Other DBs
NCBI-GeneID:
138100762
NCBI-ProteinID:
XP_068854738
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MELERIAMPPRGPRELPLALLELGCAGRFELLTGPPGAAEAPEPRATLPRGLPPFCAPLA
AELELRLLSSPEWLPIHGHQRARRSWQRTPEPRALFSLDPTPVAGGLRAERDPRTGALTG
FTEELLPSVGLSASNSPSLLRPPGPPGEGLRGGISSCPFWPGGQDEPSLEQIRAPQEQQE
EDVDFETELLTTPPGMKRGVEFKPQGKGGRGGPLSLSSLLETLDTFDLGGGXDEPGGGPG
QAQGAPPAPPTEGGPSPAAPPPHRSDSLEELLGKVAVPPIAHCPPPRRRRGTPPAPPPEP
PEEVWAEMVDAASPVEGFEQLLPDPAHKWPFRPDPFQQRAALCLERGHSVLVAAHTSAGK
TAVAEYAIALARRHMTRSIYTSPIKALSNQKFRDFRETFGDVGLLTGDVQLRPEAACLVM
TTEILRSMLYNGSDAIRDLEWVIFDEVHYVNDDERGVVWEEVLILLPEHVKLVLLSATVP
NALEFAQWVGRTKRRCVRVLSTPRRPVPLEHFLFTGNSARTRHQLFQLLGPGGAFSTQGY
YAAVEAKKEQSSKHAQSFGARQPTMAGPNPGQERGVWLALLETLRERELLPAVTFTFSRG
RCEDQAAALGSLDLLSGPERGQVRQFLTRCLARLRGSDRRLPQVLQLSELLQRGIGVHHG
GVLPLLKEVVEMLFSQGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGNSFRDLLPGEY
TQMSGRAGRRGLDATGTVIILCKGPVPELSDLHRMMLGRPSPLQSRFRLTYPMILLLLRA
PALRPHDLMRRSFAEFPLRRDATAQTRRVAALREALAALGDPEGTAGDVGDLPQYHRAVV
GLRRARAVLQRCLAQAGGQRVLAPGRVVVVCTPRHRNALGLVLQVTSGGSSRTFTTLVLS
EKPPENGGAPPEPPPDVPYPEDLLLTRLFLPEGPPGHSLEQLRPEDIVGVTAKTLRVNPE
MLLQELRPPRGPRPRSPPPGAGVGAALQELARLAGGAGREGGLPLLEALGVPPGRDPAAL
AAAAELRALGSALRGFRCVHGPRFAQQYAQFAARQELLEQLEELQFQLSDQSLLLLPEYH
QRLEVLSELGYIAGGAVALGGRVAALLSTEQLVLTELLLGNVLAPLRPDESVALLSCLVT
PGRGEPLPEGLPATLTQALERLRGVAARVGRLEQQHGLGPGPDDFVAQFGFSLVQVVYEW
ARGMPFADIARLAPVQEGTVVRAIQRLEELLRELRQAARVVGDPALAAKMEAAAAMIKRD
IVFAASLYTQ
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagcgcatcgccatgcccccccgcgggccgcgggagctgccgctggcgctg
ctggagctgggctgcgcggggcgcttcgagctcctgacgggacccccgggcgccgccgag
gcccccgagccccgcgccaccctgccgcgggggctgcccccgttctgtgccccgctggcg
gccgagctggagctgcggctactgagcagccctgagtggctaccgatccacggccaccag
cgggcccgcaggagctggcagaggaccccggagccgcgggcgctcttctctctggacccc
acgccggtggccggggggctccgggccgagcgggacccccgcacgggcgccctcacgggc
ttcaccgaggagctgctgccgtccgtggggctctcggcctccaactcgccctcgctgctg
cggccgcccggcccgcccggcgaggggctgcgggggggcatctccagctgccccttctgg
ccagggggtcaggacgagcccagcctggagcagatccgggccccgcaggagcagcaggag
gaggacgtggactttgagacggagctgctcacgaccccccccgggatgaagcggggggtg
gagttcaagccccaaggtaagggggggcggggggggccgctgtccctgtccagcctcctg
gagaccctcgacaccttcgacctgggggggggcgatgagcccggggggggccctggccag
gcccagggggcccccccagccccccccaccgagggggggcccagccccgccgcgcccccc
ccgcaccgctccgacagcctggaggagctgctgggcaaggtggctgtgccccccatcgct
cactgccccccccccaggaggaggcgggggaccccccccgcgccccccccggagcccccc
gaggaggtttgggcggagatggtggacgccgcgtcccccgtggagggcttcgagcagctg
ctgcccgaccccgcgcacaagtggccgttccgcccggacccgttccagcagcgggcagct
ctgtgcctcgagcgcggtcactcggtgctggtggccgcccacacctcggccggcaagacg
gcggtggccgagtacgccatcgcgctggcccggcgccacatgacccggtccatctacacg
tcgcccatcaaggccctgtccaaccagaagttccgggatttccgcgagaccttcggggac
gtggggctgctgacgggggacgtgcagctgcgccctgaggccgcctgcctggtcatgacc
accgagatcctgcggtcgatgctgtacaacggctccgacgccatccgggatttggagtgg
gtgatcttcgacgaggtgcactacgtcaacgatgacgagcggggcgtggtgtgggaggag
gtgctgatcctgctgcccgagcacgtgaagctggtgctgctcagcgccacggtccccaac
gccctcgagttcgcccagtgggtcgggcgcacgaagcggcgctgcgtgcgggtgctgagc
accccgcggcgcccggtgccgctggagcatttcctgttcaccgggaacagcgcccggacg
cggcaccagctgttccagctgctgggcccgggcggggccttcagcacgcaggggtactac
gcggcggtggaggccaagaaggagcagagcagcaaacacgcgcagagcttcggggcgcgg
cagcccaccatggccggccccaaccccgggcaggagcggggggtctggctggccctgctg
gagaccctccgcgagcgggagctgctgcccgccgtgaccttcaccttctcgcggggccgc
tgcgaggaccaggcggccgccctgggctccctggacctcctgagcggccccgagcgcggc
caggtccggcagttcctgacccgctgcctggcccggctgcgcggctccgaccggcgcctg
ccccaggtgctgcagctgtcggagctgctgcagcgcgggatcggcgtccaccatggcggg
gtcctgcccctgctcaaggaggtcgtggagatgctcttcagccaagggctggtcaaggtg
ctgttcgccaccgagaccttcgccatgggggtgaacatgccggcacgaaccgtcgtcttt
gactccatccgcaaacatgacgggaacagcttccgtgacctcctgcccggcgagtacacg
cagatgtcggggcgtgccgggcgcagagggctggacgccaccggcaccgtcatcatcctc
tgcaaggggccggtgcccgagctgtccgacctgcaccgcatgatgctgggccggccgtcg
ccgctgcagtcgcggttccgcctgacgtaccccatgatcctgctgctgctccgcgccccc
gccctgcgcccgcacgacctcatgcgccgcagcttcgccgagttcccgctgcgccgcgac
gccacggcgcagacgcgtcgcgtggccgccctcagggaggcgctggcggcgctgggggac
cccgaggggacggcgggggacgtgggggacctgccccagtaccaccgcgccgtcgtgggg
ctgcgccgcgcccgggccgtgctccagcggtgcctggcgcaggcggggggacagcgggtg
ctggcaccaggacgggtggtggtggtctgcaccccgagacaccgcaacgcgctggggctg
gtcctgcaggtgacctccgggggctccagccgcaccttcacgacgctggtgctgagcgag
aagccccccgagaacgggggggcccccccagagccccccccggacgtgccctaccccgag
gacctgctgctcacccgcctcttcctgcccgagggcccccccgggcactccctggagcag
ctgcgccccgaggacatcgtgggggtcacggccaagacgctgcgggtgaaccccgagatg
ctgctgcaggagctgcgccccccgaggggaccccggccccggtcccccccgccgggcgcg
ggcgtgggcgcggcgctgcaggagctggcgcggctggcggggggggccggcagggagggg
gggctgcccctgctcgaggctctgggggtgcccccgggccgggaccccgcggcgctggcg
gcggcggccgagctgcgagccctgggctcggccctgcgcggcttccgctgcgtgcacggc
ccccgcttcgcccagcagtacgcccagttcgccgccaggcaggagctgctggagcagctg
gaggagctccagttccagctgtcggaccagtccctgctgctgctgcccgagtaccaccag
cgcctcgaggtgctgtcggagctgggctacatcgcgggcggcgcggtggccctgggcggg
cgcgtggcggccctgctgagcacggagcagctggtgctgaccgagctgctgctgggcaac
gtcctggcgccgctgcggccggacgagagcgtggccctgctgtcctgcctggtcaccccg
ggccgcggagagcccctgcccgaggggctgccggccaccctcacgcaggccctggagcgg
ctgcggggcgtcgctgcccgcgtggggcggctggagcagcagcacggcctcgggcccggc
cccgacgacttcgtggcccagttcggcttcagcctcgtgcaggtcgtctacgagtgggcg
cggggcatgcccttcgcggacatcgcgcggctggcgccggtgcaggaggggacggtggtg
cgggcgatccagcggctggaggagctgctgcgggagctgcgccaggccgcgcgcgtcgtg
ggggaccccgcgctggccgccaagatggaggcggccgccgccatgatcaagcgcgacatc
gtcttcgccgccagcctgtacacgcaataa
DBGET
integrated database retrieval system
