Aphelocoma coerulescens (scrub jay): 138100807
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Entry
138100807 CDS
T10543
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03020
RNA polymerase
acoe03420
Nucleotide excision repair
Brite
Enzymes [BR:
acoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
138100807 (POLR2A)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
138100807 (POLR2A)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
138100807 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138100807
NCBI-ProteinID:
XP_068854770
LinkDB
All DBs
Position
Unknown
AA seq
1969 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKILRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMDPK
FARPEWMVCTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELEREFERMRE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLV
IVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPD
FDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDDDN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgggccgccctcgggcgacagcgcctgcccgctgcgcaccatcaaacgagtc
cagttcgggatcctcagccccgatgagatgaaacggatgtcggtgaccgaggggggcatc
aaataccccgaaaccaccgaggggggacgccccaaactgggggggctcatggacccccgg
cagggcgtcatcgagaggacggggcggtgccagacctgtgctgggaacatgacggagtgc
ccgggccacttcgggcacatcgagctggccaagcccgtgttccacgtgggcttcctgggg
aaaaccatgaaaatcctgcgctgcgtctgcttcttctgctccaagctcctcgtggactcg
aacaaccccaagatcaaagacatcctgggcaagtccaaggggcaacccaagaagcggctg
acgcacgtctacgacctgtgcaagggcaagaacatctgcgagggaggcgaggagatggac
cacaagttcggcgtggagcagcccgagggcgatgaggacctcaccaaggagaagggccac
ggcggctgcgggcgctaccagccgcgcatccggcgctcggggctggagctctacgccgag
tggaagcacgtgaacgaggactcgcaggagaagaagatcctgctgagccccgagcgcgtg
cacgagatcttcaagcgcatctcggacgaggagtgcttcgtgctgggcatggaccccaaa
ttcgcccggcccgagtggatggtgtgcaccgtgctgcccgtgccgccgctctccgtgcgc
ccggccgtcgtcatgcagggctctgctcgcaaccaggacgacctcactcacaagctggcc
gacatcgttaagatcaacaatcagctgcggcgtaacgagcagaacggggcggccgcgcac
gtcatcgccgaggacgtcaaactgctgcagttccacgtggccaccatggtggacaacgag
ttgcccggcttgcccagggccatgcagaaatcggggcgtcccctgaagtccctgaagcag
cggctgaagggcaaagagggtcgggttcggggcaacctcatgggcaagcgcgtggatttc
tcggctcgcaccgtcatcacccccgaccccaacctggccatcgaccaggtgggcgtcccc
cgctccatcgcggccaacatgaccttcgccgagatcgtcacccccttcaacatcgacagg
ctgcaggagttggtgcgcagggggaacagccaatacccgggggccaaatacatcatcagg
gacaacggggacaggatcgacctccgcttccaccccaaacccagcgacctccacctgcag
atcggctacaaggtggagcgtcacatgtgcgacggggacatcgtcatcttcaaccggcag
ccgaccctacacaagatgtccatgatgggccacagggtcaggatcctgccctggtccacc
ttccgtctgaacctgagcgtcaccacgccctacaacgccgactttgacggcgatgagatg
aacctgcacctgccgcagtcgctggagacgcgggcggagatccaggagctcgccatggtg
ccccgcatgatcgtcaccccccagagcaaccggcccgtcatgggcatcgtgcaggacacg
ctgacggccgtgcgcaagttcaccaagagggacgtcttcctggagaggggcgaggtgatg
aacctgctgatgttcctgtccacgtgggacgggaaggtgccccaaccggccatcctgaag
ccgcgacccctctggacagggaagcaaatcttctccctcatcatcccgggccacatcaac
tgcatccgcacccacagcacccaccccgacgacgaggacagcggcccctacaaacacatc
tcccccggggacaccaaggtgatcgtggagaacggggagctcatcatgggcatcttgtgc
aagaagtccttggggacgtcggccggttccttggtgcacatctcctacctggagatgggc
cacgacaccacgcgcctcttctacagcaacatccagaccgtcatcaacaactggctgctc
atcgagggtcacaccatcggcatcggtgactccatcgccgacgccaagacctaccaggac
atccagaacaccatcaagaaggccaagcaggacgtcatcgaggtcatcgagaaggcccac
aacaacgagctggagcccacgccgggcaacaccctccggcagaccttcgagaaccaggtc
aaccggatcctcaacgacgcccgcgacaagaccggctcgtcggcccagaagtccctgtcc
gagtacaacaacttcaaatccatggtggtctcgggggccaagggctccaagatcaacatc
tcccaggtcatcgccgtggtgggccagcagaacgtggaaggcaaacggatcccgtttggc
ttcaagcaccggactcttcctcacttcatcaaggacgattacggccccgagagccgcggc
ttcgtggagaactcctacctggccggtctcacccccaccgagttcttcttccacgccatg
ggtggtcgggaaggtctcatcgacacggccgtgaagacggccgagaccggctacatccag
cggcgtctgatcaagtccatggagtcggtgatggtgaaatacgacgccaccgtcaggaac
tccatcaaccaggtggtgcagctgcgctacggcgaggacggcctggccggcgagagcgtc
gagttccagaacctggccaccctcaaaccctccaacaaggccttcgagaagaagttcaag
ttcgactacaccaacgagcgggcgctgcggcggacgctgcaggaggagctggtcaaggac
atcctgtccaacgcgcacatccagaacgagctggagcgcgagttcgagcgcatgcgcgag
gaccgcgaggtgctgcgggtcatcttccccaccggggacagcaaggtggtgctcccctgt
aacctgctccggatgatctggaacgctcagaagattttccacatcaactcccggctgccc
tcggacctgcaccccgtcaaggtggtcgagggggtgaaggagctgagccgcaagctggtg
atcgtgaacggggaggaccctctgagccggcaggcgcaggagaacgcgacgctgctcttc
aacatccacctgcgctccaccctctgcagccgccgcatggtggaggagttccgcctcagc
ggggaggccttcgactggctgctgggcgagatcgagtccaagttcaaccaggccatcgcc
caccctggcgagatggtgggcgctctggccgctcagtccttgggcgagccggccactcag
atgaccctcaacaccttccactacgccggggtgtcggccaagaacgtcacgttgggcgtc
ccccgcctcaaggagctcatcaacatctccaagaagcccaagacgccgtcgctcaccgtg
ttcctgctgggccagagcgcccgcgacgccgagcgcgccaaggacatcctgtgccgcctg
gagcacaccacgctgcgcaaggtgacggccaacacggccatctactacgaccccaaccct
cagagcacggtggtggccgaggaccaggagtgggtgaacgtttactacgagatgcccgac
ttcgacgtcagccgcatctcgccctggctgctccgcgtcgagctcgaccgcaagcacatg
accgaccgcaagctcaccatggagcagatcgccgagaagatcaacgccggcttcggcgac
gacctcaactgcatcttcaacgacgacaacgccgagaagttggtgctgcgcatccgcatc
atgaacagcgacgagaacaagatgcaggaggaggaggaggtggtggacaagatggacgac
gacgtcttcttgcgctgcatcgagtccaacatgctgacggacatgaccctgcagggcatc
gagcagatcagcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatcatc
atcaccgaggacggggagttcaaggctctccaggagtggatcctggagaccgacggcgtc
agcctcatgcgggtgctgagcgagaaggacgtggaccccgtgcgcacgacctccaacgac
atcgtggagatcttcaccgtgctgggcatcgaggcggtgcggaaggcgctggagcgggag
ctgtaccacgtcatctccttcgacggctcctacgtcaactaccggcacctggcgctgctg
tgcgacaccatgacctcgcgcgggcacctgatggccatcacccggcacggcgtcaaccgc
caggacaccgggcccctcatgaagtgctccttcgaggagacggtggatgtcctgatggag
gcagctgcccacggcgagagtgaccccatgaagggcgtgtccgagaacatcatgctgggc
cagctggccccggccggcaccggctgcttcgatctcctgctggacgccgagaagtgcaag
cacggcatggagatccccagcgccctgcccggcctcggcgtcggcggccccactgggatg
ttcttcggctcggcccccagccccatgggggggatgtccccggccatgaccccctggaac
cagggggccacccctgcctacggtgcctggtcccccagtgtgggcagcgggatgaccccg
ggtggggccgggttctcccccagcgccgcctcggacgcatccggcttcagccccggctac
tccccggcctggtcaccaacccccggttccccggggtcaccgggaccctccagcccctac
atcccctcccctggcggggccatgtcccccagctacagcccgacgtcccccgcctacgag
ccgcggtcaccggggggctacaccccacagagccccagctacagccccacgtcaccgagc
tacagccccacgtcgcccagctacagccccacctcgcccaactacagccccacctcgccc
agttacagcccgacctcgcccagttacagcccgacctcgcccagttacagccccacgtcg
cccagttacagccccacgtcgccgagctacagccccacctcgcccagctacagcccgacg
tcgcccagctacagcccgacatcacccagttacagcccgacgtctcccagttacagcccg
acctcgcccagttacagcccgacctcgccgagctacagccccacttctcccagttacagc
cccacctcgcccagttacagccccacctctcccagttacagcccaacctcgcccagttac
agcccgacctcgcccaactacagccccaccagccccaactacaccccgacctctcccagc
tacagccccacctctcccagttatagccccacctcgcccaactacaccccgacctcgccc
aactacagccccacctcgcccagttacagccccacctcgcccagttacagccccacctcg
cccagttactccccgtccagcccccgctacaccccgcagtcgcccacctacacccccagc
agccccagttacagccccagcagccccagttacagccccacctctccaaagtacaccccg
accagccccagctacagccccagctcccccgagtacaccccgacctcgcccaagtacagc
cccacctcgcccaagtacagccccacctcgcccaagtacagccccacctcgcccacctac
agccccaccacgcccaagtacagccccacctcgcccacctacagccccacctcgcccgtc
tacaccccgacgtcacccaagtacagccccacctcgcccacctacagccccacatcgccc
aagtacagccccacctcgcccacctacagccccacgtcgcccaagggctccacgtacagc
cccacgtcccccggctacagccccacgtcgccgacctacagcctcaccagcccggccatc
agccccgacgacagcgacgacgacaactga
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integrated database retrieval system
