KEGG   Aphelocoma coerulescens (scrub jay): 138101643
Entry
138101643         CDS       T10543                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein XRCC1-like
  KO
K10803  DNA-repair protein XRCC1
Organism
acoe  Aphelocoma coerulescens (scrub jay)
Pathway
acoe03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:acoe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    138101643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:acoe03400]
    138101643
DNA repair and recombination proteins [BR:acoe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     138101643
SSDB
Motif
Pfam: XRCC1_N BRCT PTCB-BRCT BRCT_2 LIG3_BRCT
Other DBs
NCBI-GeneID: 138101643
NCBI-ProteinID: XP_068855518
LinkDB
Position
Unknown
AA seq 539 aa
MAAASAMPELPLTRVVSVTSADPRHPAENLLRPDAGGRWRGAAAGEKQLSVVLELGGSRP
IHSLHIGNDGAAFVEVLVGSSAGGDFQVLLPSAALMSPSESRAGAEPRRVRLFGPDSLVK
GPAQGTWDRLRVVLSQPYCQSRPFGLSFIRVFAAPEEEEAPPEAPVRRLGPFTLREEGGS
PRRPPGALFYQRPPSPTPAPPQDPPGPSYAVAALQASAGCAPKPPKRRLPAPTAKTNGTP
PKKPKPAKTPGPGPSPAASGSPPSPPRPGGTPKAGVLEGVVLVLSGFENPLRSQLRAAAV
GLGAGYRPDWTSDSTHLVCAFPRTPKAARARRLGGLLVGPAWIWDCQRSGRRLPCGPYLL
DGSASSSSDGEGPEDAPPPPRPSPKAAKGAGPPPLTPPPAAPATPPESGDSEDQSEEDDP
YGGSTEENSEEGEGEEEEEEPIPPLPDFFEDKTFFLHGEFPAGEGRRLLRFAVAFGGTVA
PRMDGSVTHVVTAQGWDPAFDEALELRPSLTFVRPDWLLRCGEQQRPLPAQPFAVVPRA
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggcggcggcctccgcgatgccggagctcccgttaacgcgcgtcgtgtccgtgaccagc
gctgacccgcgtcacccggccgagaacctgctgcggccggacgccggcgggcgctggcgg
ggggcggcggccggcgagaagcagctcagcgtcgtgctggagctgggggggtcccggccc
atccactcgctgcacatcggcaacgacggcgccgctttcgtggaggtgctggtgggctcc
tcggccgggggcgacttccaggtgctgctgcccagcgcggcgctgatgtcgcccagcgag
agccgcgccggggccgaaccgcgccgggtccggctcttcgggcccgactcgttggtcaaa
ggtccggcccagggcacctgggaccggctgcgggtggtgctgagccagccctactgccag
agccgccccttcggcctctcgttcatccgggtgttcgcggcccctgaggaggaagaggcc
ccgcccgaggcgccggtccggcgcttgggccccttcacgctgcgggaggaggggggcagc
ccccgccgcccccccggggccctcttctaccagcggcccccctcccccaccccagccccc
cctcaggacccccccggccccagttacgccgtggccgcgctccaggccagcgcgggctgc
gcccccaagccccccaagcgccgcctccccgcccccaccgccaaaaccaacggcaccccc
ccgaaaaaacccaaaccggccaagacccccggccccggcccctcccccgcggcctcgggg
agccccccgagcccccccaggcccggcgggacccccaaagccggcgtgctggagggggtg
gtgctggtgctgagcggcttcgagaaccccctgaggagccaactgcgggcggccgccgtg
gggctgggggccggctaccggcccgactggacctcggacagcacccacctggtgtgcgcc
ttccccaggacgccgaaggcggcgcgggcccggcggctcggggggctcctggtggggccg
gcctggatctgggattgccaaaggagcgggaggagattgccctgcggcccgtacctcctg
gatggctccgcctcttccagcagcgacggggaggggcctgaggatgccccgccccctcca
cgcccctcccccaaagcggccaaaggggcggggcctcctcccctgacccctccccccgcg
gccccagccacgccccccgagtcaggtgacagcgaggaccaatcagaggaggacgacccc
tacggcggctccaccgaggagaacagcgaggagggggagggggaggaggaggaggaggag
cccatcccccccctgcccgatttttttgaggacaaaacgttcttcttgcacggcgagttc
ccggcgggggaggggcggcggctgctgcgcttcgccgtggccttcggagggaccgtggcg
ccccgcatggacggctcggtgacgcacgtggtgacggcgcagggctgggaccccgccttc
gacgaggccctggagctccgcccctcgctgaccttcgtgcgccctgattggctgctgcgg
tgcggggagcagcagcgccccctgccggcccagcccttcgccgtcgtgccccgcgcatga

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