Aphelocoma coerulescens (scrub jay): 138102696
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Entry
138102696 CDS
T10543
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138102696
03036 Chromosome and associated proteins [BR:
acoe03036
]
138102696
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
138102696
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
138102696
SLIK complex
138102696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
138102696
NCBI-ProteinID:
XP_068856525
LinkDB
All DBs
Position
W
Genome browser
AA seq
1654 aa
AA seq
DB search
MYSEDWQMSGSGSVSGTSSDSESEEDRERSSCEDSESDYEPENKVKSRKLPSRIEPKSGK
KIAGQKKRQLDSSDDDDYDKRGSRRQATVNVSYKEAEETKTDSDDLLEVCGEDVPQPEED
EFETIEKFMDSRIGRKGATGAATTIYAVEADGDPNTGFEKSKEPGELQYLIKWKGWSHIH
NTWETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQ
IVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQTCIDEYFSRNQSKTT
PFKECKILKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG
LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRN
MIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWVFIGVDEAHRLKNDDSLLYKT
LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREFGYASLHKE
LEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFL
NIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLI
FSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGL
GINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKASVEEDILERAKKK
MVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFGAEELFKEPEGEEEEPQE
MDIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPEQNLRNWEEIIPE
VQRRRIEEEERQKELEEIYMLPRMRNCAKQISFNGSEGKRSRRRRYSGSDSDSASERKRP
KKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSEMDLRRLG
ELVHNGCIKALKDNSFGQERAGGRFGKVKGPTFRISGVQVNAKLVISHEEELAPLHKSIP
ADPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTQKIL
PDDPDKKPQAKQLQTRADYLIKLLNKDLARKEVQRLTGAGNSKRKKARSKKNRATKAAKI
KEEIKSDSSPPSEKSDDDEYNEDEIVSVKCPHKKIKAEENEEKPEPDIGIKKEAEEKKET
REKENKRHLKRDKKEKEDKKEFKNIKEKRDNKLKESTEKEKEVKEEKVNELKSENKEKNK
KVSLLDIPVHITATSETVPISEESEELDQRTFSVCKERMRPVKAALKQLDRPEKGLSERE
QLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIK
KRQESQHSDQNISNKVNTHVIRNPDVERLKENANHDDSSRDSSSDRNLSQYYDHHKDRHQ
EDAYNKNDSRKRSYSAFSNGKDHRDWDHYKQDSRCYSDGKRRKLDDHRSRDHRSNLEGSL
KDSWPHSNHRSHSDHRIHSDHRSTSEYIHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQR
SPYGSRSPIGRRSPFEHSSNHKSTPEHTWSSRKT
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgtacagtgaagactggcaaatgtctgggtcagggtcagtatcaggaactagttctgat
tctgaatcagaggaagatagagagagaagcagttgtgaagatagtgaatctgactatgag
ccagaaaacaaagtcaaaagccgtaaacttccaagcagaattgagccaaaaagtggcaaa
aagattgcaggacagaaaaagaggcagcttgattcgtcagatgatgatgactatgacaag
agaggatctcgtcgccaggcaacagtcaatgttagttacaaagaagctgaagaaaccaag
acagattctgacgacttgttggaagtttgtggagaagatgtcccacagcctgaagaagat
gaatttgaaactatagagaagtttatggatagtcgaattggccgaaaaggagccactggt
gctgcaaccaccatctatgcagttgaggcagatggtgacccaaatactgggtttgaaaag
tcaaaggagccaggagaattacaatatcttattaaatggaaaggctggtcacacatccat
aatacatgggaaactgaggaaacactgaagcaacaaaatgttaaaggaatgaagaaactg
gacaactataagaaaaaagatcaggaaacaaaacgctggctgaaaaatgcttctccagaa
gatgtggaatattataactgccagcaggaacttacagatgatctacataaacagtatcaa
atagtggagaggataattgctcattcaaatcagaaatcagcagctggttatccagattac
tattgcaagtggcaaggtctgccttattcagaatgtagctgggaagatggtgctctcatc
gccaaaaaatttcagacgtgtattgatgagtattttagcagaaaccaatccaagactact
ccatttaaggagtgtaagattctaaaacagaggccgaggtttgttgcactaaagaagcaa
ccatcttatattggaggacatgaaggtttagagttaagagattatcagttaaatggactg
aactggcttgcccactcatggtgcaaagggaatagttgtattcttgcagatgaaatgggt
ctgggtaaaacaatacaaacgatttcttttctgaactacctgtttcacgaacatcaactg
tatgggcctttcttgctagtcgtgccgctttctaccttgacatcttggcaaagagagatt
caaacttgggctcctcagatgaatgctgtggtttacttaggagatataactagcagaaat
atgataagaactcatgagtggatgcatccacagaccaagcgattaaaatttaatatactt
ctaacaacttatgaaattttgctgaaggataagtcattccttggtggtctgaattgggta
tttataggagttgatgaagctcatcgtttaaaaaatgatgattcccttctgtacaagact
ttaatagactttaagtctaatcatcgtcttcttattactggaacccctctgcaaaactcc
cttaaagagctttggtctttgctgcacttcatcatgccagaaaagttttcttcctgggaa
gattttgaagaggagcatggcaaagggagagagtttggttatgcaagtcttcacaaagaa
cttgaaccatttttactcagaagagttaaaaaagatgtagaaaagtctttacctgctaaa
gttgaacaaattttgaggatggaaatgagtgcattgcagaagcaatattacaagtggatt
ttaaccaggaattataaagccctgagtaaaggttcaaaaggcagtacctcgggctttttg
aacattatgatggaactcaagaagtgctgcaaccattgctacctcattaaaccaccagat
gataatgaattctataataaacaggaggccttacagcatttaatacgtagcagtggaaaa
ctaatccttcttgacaagctactgattcgtctacgagaacgtggcaacagagtactgatt
ttctctcagatggtgaggatgctagatatcctagcagagtatttgaagtatcgtcagttt
ccctttcagagacttgatggatcaataaaaggggaattgaggaaacaagcattggatcat
tttaatgcagaaggctcagaggacttctgctttttgctgtctaccagagctggaggatta
ggtataaacttagcatctgctgacactgtagttatatttgattctgattggaatccacag
aatgatctgcaggcgcaggctagagctcataggattggacagaagaaacaggttaatatt
tatcgtctagtcacaaaagcatcagtagaagaagatattcttgaaagagccaagaaaaag
atggtgttagatcacttagtaattcagagaatggacactacagggaaaactgtactacat
acaggctctactccctccagctcaacaccttttaataaggaagagttatcagcaattttg
aagtttggtgctgaggaactttttaaagaacctgaaggggaagaagaggagcctcaggaa
atggatatagatgaaatcctgaagagggctgaaactcgagaaaatgaaccaggtccactg
actgtaggagatgagttgctttcacagttcaaggtggctaacttttcaaatatggatgaa
gatgacatcgagttggaaccagaacaaaatttaagaaactgggaagaaatcattccagaa
gtccagcggcgacgaatagaagaggaggaaagacaaaaagagcttgaagaaatatatatg
ctgccaagaatgagaaactgtgcaaaacagatcagctttaatggaagcgaagggaaacgc
agtaggaggcgaagatattctggatctgatagtgactcagcctcagaaagaaaacgacca
aaaaaacgtggaagaccgcgaactattcctcgagaaaatattaaaggatttactgatgca
gagattaggcggtttatcaagagttacaagaaatttggtggcccgcttgaaaggttagat
gctatagctagagatgctgagctagttgataaatctgagatggaccttagacgtctggga
gaacttgtacataatggatgcattaaggctttaaaggacaattcctttggccaagaaaga
gcaggaggtagatttgggaaagttaaaggcccaacattccgaatatcaggagtgcaggtg
aatgcaaagctagttatttctcatgaagaagagttggcaccgttgcacaaatccattcct
gcagatccagaagaaaggaaaagatatgtcatcccatgccacaccaaggcagctcatttt
gatatagattggggtaaggaagatgattccaatctgttaataggtatctacgaatatggc
tatggaagctgggaaatgataaaaatggatcctgatctcagtttgacacagaagatttta
cctgatgacccagataagaaaccccaggccaagcagttgcagacccgtgcagattacctc
attaaattactgaataaagaccttgcaagaaaagaagtgcaaagacttactggtgcaggc
aattcaaagaggaagaaagcaagaagtaagaagaatagagcaacaaaggctgcaaaaatt
aaagaagaaataaaaagtgactcatcaccaccctcagaaaaatctgatgatgatgagtat
aatgaggatgagattgtttcagtgaaatgtccacataaaaaaataaaagcagaagaaaat
gaagaaaagcctgagccagatattggtataaagaaggaagctgaagaaaaaaaagagaca
agagaaaaagaaaataagaggcatttaaaaagagataaaaaagaaaaagaagataagaaa
gaatttaaaaatattaaagaaaagagagataacaaactaaaagaatccacagagaaagaa
aaagaagtaaaggaagaaaaggtaaatgaactcaaatctgaaaataaagaaaaaaataaa
aaagtttcattgttggatattccagttcatattactgcaactagtgaaacagttccaata
tcagaagaatctgaagaactggatcagaggacattcagtgtgtgcaaagaaagaatgagg
cctgttaaagcagcactgaaacaattggatagaccagagaaaggcctttctgaaagggaa
cagctggagcatactagacagtgcctaatcaaaattggggaccacattactgaatgttta
aaggagtacacaaatcctgaacaaattaaacagtggagaaaaaacttgtggatttttgtc
tctaagtttacagaatttgatgccagaaagttgcacaagctgtataaacatgcaatcaag
aaacgccaagaatctcagcacagtgaccagaatattagcaacaaagtgaatacacatgta
attagaaatccagatgttgaaagactgaaggagaatgcaaaccatgatgacagtagcagg
gacagttcttctgatagaaatttgtcacagtactatgatcatcataaggacaggcatcag
gaagatgcttataataaaaatgactcaaggaaaaggtcctattcagccttcagcaatgga
aaagaccacagagactgggatcactataaacaagacagcagatgctatagtgatggtaaa
cgtagaaaactggatgaccacaggagcagagatcacaggtcaaacctggaaggaagttta
aaagacagttggcctcattcaaatcaccgttcccattcagaccacaggatacattcagat
caccgttccacttcagagtatatccatcataaatcttcgagagattataggtaccactca
gactggcaaatggaccacagagcttctggtagtggcccaaggtcaccattagatcagagg
tctccttatgggtcaagatctcctataggacgcagatctccatttgaacactcatcaaat
cacaaaagtacacctgaacatacatggagtagccggaaaacataa
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integrated database retrieval system
