Aphelocoma coerulescens (scrub jay): 138102934
Help
Entry
138102934 CDS
T10543
Symbol
FOCAD
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138102934 (FOCAD)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
138102934 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
138102934
NCBI-ProteinID:
XP_068856844
LinkDB
All DBs
Position
Z
Genome browser
AA seq
1803 aa
AA seq
DB search
MLDDIKKRFEFPNAVVQSQAVGHLIAAILKEKVSSKKIRQASDQTPALNLLWEKCCSENV
ALRTACCEGLVALVVEKHAELDYVLHGALNLIPSARNVHGLVKTICKLIQIQAIQLGKDG
DESVRSLYGIRNTPHPLITVLENRPDCWPVLLQQITVFFRQCPERSESSCVAIMASFLRY
LYCEPYQLREYAELRMGLLKILLQPHGPKHKEALSVLECEILQLLCDLVPHLQLKDLLQV
TEALFFLQELFLSLLRYPLFWKDRLSQLSLQLLCFCEVCLNVTGECSSLISLIEDNLELL
KEVFPVDQCIIGLALLLLQTPESQQKSVLSLAYKLLSCSETQDISTTALILVMPVLQILS
STTVGDCLSGDVSGATRQQLAVNLLGILKEEGVKDKQESVSCKLLFPITSSYSSLYTTWK
IMELMKEKPAVTKWLSSVKSLLPVSTQVPAHVFLLLAYLLIQENGDSLRDVLQATAEIAK
ADCSQVPNLIPVLIFKLGRPLEPALYRDILYTLPTLGVHKVCVAQILRAIHMLGSTPKLR
AIASRLMTSLWERQDRIYPELQKFLAMSDMPSVSVDKDAQWEKLIAKAACIRDICRLRPY
QHGADMLAAISQVLNECTKPDQASPAAIVLQGLRALCEAEVVCIRSTWNALSPKLSCDTR
PLILKALNELFSLVPSLTVNTNEFEKFKAQVISFLWNNTQNKDALVAISAYKSLSSFGSE
EHTILHLPGQARPEVDSLEEIDMNEDEEDQEANLFVPGSSYIKLLSLTPAAVLGAFEEFA
TSLVKQEMTNMPRAVYHSALRGGTTRLDQGKTVAGVPNFLLKMYERNKQPGMTPGLAAGM
LLCFDLPVHMGRDGKPINRFLASRGRNFQQMLVALLHEVNIQPSEWHHSILLPQSWLGFM
SRTYSAILQGRQAELEMQLKHGKEDPEEVQYKQFTAWLWVRDMLTDVIKGASKDSPVVKG
NSIFALTGLAVAVAKYESSLSSDTEGVPETEPDFIPMKHWISMVTETLLSIVNSRYQPKG
QVFPWFYQKSYSGENTASIIARSCAATALSLLVPIFIVSCKEKIEEVLSMLTDRLPGKPN
ADESQAVQIHMGLGLGMFISRLYEEKVSDIPGQQMNLVLMKSVDVLEDCCFDTSLEYNTG
CILGVGLVLSFMSHSSQTESRVHVSASLRKLCKYLDSSEDQSRGVQEVLAYSVACSCVSA
FSVGIIEAAEAEKAMSKLRTLAENNQQTYSFALALGAMVHGLSAYGHGKAEDLSNRLMPA
WIKTVLAEGSPTMERLAAVSGLVALVGSEGGMIQLKSESIQSSHFQSKLNEVIRALTQII
SFSEQIGLQTNATRLLGRLHMSCLSSTQNRASVPPDFSYLPVNSFIRAAIDFVIESGKKG
PESVPAELVKVALTPIALVGESHQYPPVNWASILSPLMRLDFGDEVKNLCLQLAVTQAQS
SQNAAMLLGMWVAPPLIYSLSMKTQKYLFMSLSLWMQHVAEDKLQSFTEVFLIQQFEVKK
HTKSPEICQCVLQGLIQAMKLPNPAQFCWSFLCQAVEKIYELLPNEVQRVELEMYIDVAR
CISEMGDSEIDRIVQISKNNIEKATFMKVYLVSQGRLSLMNLNAMIDAVARYHQKENILW
MLLQSFYHARIVRHENTGVLKRMDWLLDLMGYIRNVAYKSTPVQNVDLKECTDFLLWLFA
ASVVVWADHGAPLLLGLSADWSLWKHHMALPDLPEEHTGEHPTDKFAVQETLTLLPSSLS
LLLAKEPWKEQTQKFIDWLINMMECPKEALSKSSMDLLKVTLLALRSLAEFKKKAVWTKA
YGW
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgttggatgacatcaagaagcgatttgaatttcctaatgcagttgttcagtcacaggca
gtgggccatttgattgctgcaatactgaaagaaaaagtttcttcgaagaagatcagacag
gcttctgaccagactcctgctctgaacctgctttgggagaagtgctgcagtgagaatgtt
gccttgcgaacagcctgctgtgagggcttggtggcacttgtagtggagaaacatgccgag
cttgactacgttcttcatggagctctcaacctaattccctcagcaaggaatgtgcacggt
ttagtaaaaactatttgcaagttaatacaaattcaagctattcaactgggaaaagatgga
gatgagtctgttcggagtctgtatggaatcaggaacactcctcatccattaatcactgtc
cttgagaacagacctgattgctggccagttctactacagcagataacagtatttttccgt
cagtgtccagagaggtcagagagttcttgtgttgccataatggcttcatttctaagatac
ctgtattgtgaaccataccagttacgggaatatgctgaactgcgaatgggtttacttaag
atcttacttcagcctcatgggccaaagcacaaagaagcactctccgtgttggaatgtgag
attcttcaacttctatgtgatttggttccacacctgcagcttaaggacttactgcaagtt
acagaagccttgtttttcctgcaagagctgttcctcagcctactacgctatcctttgttt
tggaaagatcggttatcccagcttagtctgcagctgttatgcttctgtgaagtatgttta
aatgtaacaggagaatgctcatctttgatctctctaatagaggacaacttagagctctta
aaagaggtatttccagtggaccagtgtataattgggctagctcttttactgctgcaaact
ccagaaagtcagcaaaagtctgtcttgagtctagcctacaagctcctctcatgttcagaa
acccaggacatctcaaccacagcccttattttggtgatgcctgtgctacagatcttatct
tctacaacagttggagactgcctgtcaggggatgtttctggagctaccaggcagcagctg
gctgtaaatctcttgggaatattaaaggaggagggtgtgaaggataaacaggaatcggtg
tcctgcaaactccttttccccataaccagctcttacagttcgttgtatacaacctggaag
atcatggagctcatgaaagagaagcctgcagttactaaatggttatcttcagtcaagtca
ctgctacctgttagcactcaagtccctgcccatgtttttcttttattggcttatctactg
atccaagaaaatggagacagtcttcgtgatgtactccaagctacagcagaaatagccaag
gctgattgttctcaggtcccaaatctgatcccagttctgatatttaaattgggaagacct
ttggagcctgcactttacagggatatattgtatacattgcctacactcggtgtacataag
gtttgtgtagctcagattctacgtgccatacacatgctggggagcacgccaaagctcaga
gcaattgcctcacggctgatgacatcattatgggaaagacaggatcgaatttacccagaa
ctgcagaagttcttggccatgtctgatatgccctctgtatctgttgacaaagatgctcaa
tgggaaaagctgattgctaaagctgcttgtataagagatatatgtaggctgagaccatac
cagcatggagcagacatgttggctgcaatttcccaggtattaaatgaatgcacaaaacct
gatcaagcttcacctgctgccatagtattacagggtctccgggcactttgtgaggctgag
gttgtttgcatccgttctacatggaatgctctgtcaccaaagctgagttgtgatacaaga
cccctcattttaaaagcgctgaatgaattgttttccctggttccctcattaacagtgaat
acaaatgaatttgagaaattcaaagctcaagttatcagcttcctttggaacaatacacag
aacaaggatgcccttgtagccatttcagcctataaatcactctcatcatttggctctgaa
gaacatacaattcttcatcttcctggacaggcacgaccagaagttgactcactggaagag
atagacatgaatgaagatgaagaggatcaggaagcaaatctatttgttccgggttcttca
tatatcaagctgctgtctctaacaccagctgctgttttaggagcttttgaagagtttgca
acatcacttgtgaaacaggagatgaccaacatgccccgtgctgtgtatcattctgccttg
agaggagggaccacacgcttggaccaggggaagacagtggcaggtgttccaaatttcttg
ctgaaaatgtatgagaggaacaagcaaccaggcatgacaccaggccttgcagctggcatg
ttgctgtgtttcgacctcccagtccacatgggcagggatggcaagcctattaatcgattt
ctggccagcaggggccgcaatttccagcaaatgttggttgccctccttcatgaggttaat
attcagccttctgaatggcaccactccatactgcttccacagtcctggttaggatttatg
agtcgaacctacagtgcaatcctgcaggggaggcaggcagagctggagatgcagctaaaa
catggtaaagaggatcctgaagaggtgcagtacaaacaatttacagcctggctatgggtc
agagatatgttgaccgatgttatcaaaggtgcctccaaagacagcccagtggtgaaagga
aactctatttttgctttaactggccttgctgttgctgtagccaaatacgaaagcagcctt
tcctcagacactgaaggagtgcctgagactgaacctgattttattcctatgaaacactgg
atttccatggtcacggagaccctcttgagcattgtgaatagccgctaccaacctaaaggt
caggtcttcccttggttctatcagaaatcctattcaggtgaaaatactgctagtattata
gctcgatcctgtgcagccacagctttgtctctcctggtgccaattttcattgtatcatgt
aaggagaagattgaggaggtcctgagtatgcttactgacaggttacctgggaaaccaaat
gctgatgagtctcaagctgttcaaatccacatgggtcttggtttggggatgttcatctca
cgtttgtatgaagaaaaagtcagtgatatacctggtcaacagatgaacttggttctcatg
aagtccgtggatgtgttggaggactgctgctttgacaccagtctggagtacaacactgga
tgtattttaggagtaggacttgttctttcatttatgagtcacagtagccaaacagaatca
cgagtgcatgtttccgcttcattgcgaaaactctgcaaatacctggacagcagtgaggac
caaagcagaggagtccaggaggtacttgcctattctgtggcctgttcctgtgtctccgct
ttcagtgttggaatcatagaagcagctgaggctgaaaaggccatgagcaagctacggacc
ttagcagaaaataatcagcagacctacagttttgctttagctttaggtgcaatggtacat
ggattgtcagcttatggtcatgggaaagctgaagacctgagtaacagactaatgccagcc
tggataaaaactgtgcttgcagagggttctccaacaatggagcgtctggctgctgtcagt
gggctggttgcactggtgggctctgaaggaggcatgatacagctgaaatctgagagcatt
cagtcctcacactttcaaagtaagctgaatgaagtgatcagagcccttacacagattatt
agtttctcagagcagattggtcttcagacaaatgcaacaagacttctgggacgccttcac
atgtcctgtttatcttctacccagaacagggcatctgttcctccagattttagctaccta
cctgtaaacagctttatcagagcagccattgattttgtcattgaaagcggaaagaaaggc
cctgaatctgtcccagctgagctggtgaaagtagcactgacacccattgcgttagttgga
gaaagccatcagtatccacctgtaaactgggcatccattctttctcctttgatgaggctg
gacttcggtgatgaggtaaaaaatctctgccttcaactggctgtgacacaggcccagtca
tctcaaaatgcagcaatgcttttggggatgtgggtggcacctccccttatctacagtctc
agtatgaaaactcagaaataccttttcatgtccctgtccctgtggatgcaacatgttgca
gaagacaaactgcagtcttttacagaagtgtttctgatacaacaatttgaagtgaagaag
cacacaaaaagcccagaaatttgccagtgtgttctacaggggctcatccaggcaatgaaa
cttcccaaccctgcccagttttgctggagctttttgtgtcaggctgtggagaaaatatat
gagcttctccctaatgaggttcagagagttgaactggagatgtatatcgatgtagcaaga
tgtatctcagaaatgggtgattcagagatcgatcgcattgtccagatctccaagaacaat
atagagaaggccacgttcatgaaagtgtatttagtttctcaaggcagattgtctctgatg
aacttgaatgccatgattgatgctgtggctagatatcaccagaaagaaaatattttatgg
atgctcttgcaaagtttctatcatgctcgtattgtgagacatgaaaatacaggagttctg
aaaagaatggactggctgttagatctgatgggctacatcagaaatgtagcatacaaatca
acacccgtacaaaatgttgatctgaaagagtgcacagatttcctcctgtggctgtttgca
gcttctgtggtggtctgggctgaccatggtgcaccattacttcttggcctcagtgctgac
tggtcactgtggaaacaccacatggcgttaccagacttacctgaggaacacactggcgag
cacccaactgacaagtttgctgtgcaagagactctcactctccttccaagcagcctttcc
cttttgctggctaaagaaccgtggaaagaacaaacgcagaagtttattgactggctgatc
aatatgatggaatgtcctaaggaagcattatcaaaatcttccatggacctactgaaagtt
acacttctggccttgagatctcttgcagagttcaagaagaaagctgtgtggactaaagct
tatgggtggtag
DBGET
integrated database retrieval system
