Aphelocoma coerulescens (scrub jay): 138102963
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Entry
138102963 CDS
T10543
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138102963 (MTREX)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
138102963 (MTREX)
Spliceosome [BR:
acoe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138102963 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
138102963 (MTREX)
Ribosome biogenesis [BR:
acoe03009
]
Eukaryotic type
Pre-60S particles
Helicases
138102963 (MTREX)
Transfer RNA biogenesis [BR:
acoe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
138102963 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
138102963
NCBI-ProteinID:
XP_068856896
LinkDB
All DBs
Position
Z
Genome browser
AA seq
1047 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAVATSGAKKSKTGPAEGARRPGKRLEEKPSVPAIVKPKREVEL
DSTENVFLGKKPKLEDILSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKDSLKNSATESAKPARPDEKGEMQV
VPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVLEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGMY
FTFTGHEAILEVMGGRGLHRYQGAKGK
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaggacgcggccgtcgcc
acctctggcgccaagaaaagcaaaacaggccccgccgagggtgctaggaggccgggaaaa
cgattggaagaaaagccttcagtaccagcaatagtaaagccaaaaagggaagttgagctt
gatagtactgaaaatgtctttttgggaaaaaagccgaaattggaagatattttatcagaa
gatgttaatttgacagatctgatgcctcaagtaaaggtgcagtctgtggaaactgttgaa
ggttgtacacatgaggttgcgcttccagcaaatgaagaattcacgggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaaaact
gtttgtgctgagtatgcaattgccctggctttgagggaaaagcagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaaccctacagcttcttgtttggtaatgaca
actgagattttgagaagtatgctctacagaggttctgaggttatgcgtgaagtcgcatgg
gttatttttgatgaaatccactacatgagagatacagaacgtggtgtggtttgggaagag
acaattattttgcttcctgataacgtacattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
actgactatcgacccactccactgcagcattatatatttccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggatcagaaaggcaggaaaggaggaaca
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggttgaagaagtcttcaataatgcaatt
gattgtctctccgatgaagacaaaaagcttcctcaggttgaacatgtgcttcccctcctg
aaacgaggaattggtattcatcatggtggtttgcttcctatcttaaaagaaaccatagaa
attcttttctcagagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacgattggc
aagcagcttttgaagggttcagccgatcccttaaacagtgcatttcacctgacatacaac
atggtattgaacttgcttcgagtagaggaaattaatcctgaatacatgttagaaaaatcc
ttttatcagttccagcattacagaactattccagaaatagtggaaagagtcaataatttg
gaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactacaga
attcgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaaccaaag
tactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattccggt
gaattggaccctttgtatgtagttgaagtgctcctgcactgcagcaaagacagtctgaaa
aattctgctactgagtctgcaaagccagccagacctgatgagaaaggagagatgcaggtt
gttcctgttttggtacatcttgtctcagctatcagcagtgtccgactttacataccaaaa
gacctgaggccaattgataacaggcaaagtgtgttaaaatctgtactggaagtacagaaa
cggtttcctgatggagtgcccttactagaccctattgatgacatgggcatcaaagaccaa
gggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacatcct
cttcacaatgatccaaacttggaaaccatatacaaactttgcgaaaaaaaagcacagatt
gctatggatattaaagtagcaaagcgagaattgaagaaagccagaaccgtcctacaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttcagat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgcactg
ctcagctgttttgtgtttcaagagaattccagtgaaatgccaaaattgactgagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaa
gcaaaactggaaattgatgaagaaaattacttgaattctttcagaccaaacctaatggat
gttgtctatacatgggcaaatggagctaacttcgctcacatctgcaaaatgacagatgtc
tttgaaggtagcataattcgttgcatgaggcgcctagaagaactgcttcggcagatgtgc
caggctgcaaaagccattgggaacacagaactggaaaataagtttgcagagggtatgtat
ttcactttcacaggacatgaagcaattctagaagtgatggggggaagggggctgcacagg
taccaaggggccaaaggtaaataa
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