Aphelocoma coerulescens (scrub jay): 138102985
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Entry
138102985 CDS
T10543
Symbol
TNPO1
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138102985 (TNPO1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138102985 (TNPO1)
03009 Ribosome biogenesis [BR:
acoe03009
]
138102985 (TNPO1)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138102985 (TNPO1)
Ribosome biogenesis [BR:
acoe03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
138102985 (TNPO1)
Pre-60S particles
138102985 (TNPO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_2
Arm
IBN_N
TOR1L1_N
Vac14_Fab1_bd
HEAT_EF3_N
Cnd1
TPR_IPO5
HEAT_MROH2B_C
TPR_DNAAF5
PDS5
Adaptin_N
MMS19_C
HEAT_GCN1_C
INTS7_N
HEAT_GCN1_C_2
Dopey_N
CandA_N
RTP1_C1
ARM_TBCD
PIK3R4-like_middle
TPR_TTI1_C
DUF3689
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
138102985
NCBI-ProteinID:
XP_068856954
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All DBs
Position
Z
Genome browser
AA seq
890 aa
AA seq
DB search
MEYEWKPDEQGLQQILQLLKESQSPDTTTQRAVQQKLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFHNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL
QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV
MLLEVRMDRLLPHMISIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKEVLCRHLTKL
IPVLVNGMKYSEIDIILLKGDVEEDEAIPDSEQDIRPRFHRSKTVAQQHEEDGIEDDDDD
DDELDDDDTISDWNLRKCSAAALDVLANVFRDELLPHILPLLKELLFHPEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVNLVQKTLAQAMLHNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMITVNPSGVVQDFIFFCDAVA
SWISPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAYYGV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgagtggaagcccgacgagcaggggctccagcagatcctgcagctgctcaag
gagtcccagtccccggacaccacaacgcagagagccgtgcaacaaaaactagaacaactc
aatcagtatccagatttcaacaactacctgatttttgttcttacaaagttgaagtctgaa
gatgagccaacacgttccttgagtggtcttatcttgaagaataatgtaaaagcacatttt
cacaactttccaaatggggtaactgacttcattaaaagtgaatgtctgaacaacatcggt
gattcctcccccttaattagagctactgtagggattctgataacaaccattgcctcaaaa
ggggagttacagaattggcctgaactcttgccaaagctttgcagcctgttggattctgaa
gattacaatacctgtgagggcgcttttggcgctcttcagaagatatgtgaagattccgct
gaaattttagatagtgatgtattggaccggccactcaatatcatgatacctaagttcttg
cagttcttcaagcacagcagtccaaaaatacggtctcatgcagtggcatgtgtcaatcaa
tttatcatcagcagaactcaagctcttatgttgcacatagattcttttattgagaatctt
tttgcattggctggtgatgaggagcctgaagtacgcaaaaatgtttgccgtgctctggta
atgttgctggaagttcggatggatcgcctgcttcctcatatgattagtatagttgagtac
atgcttcaaaggacccaggaccaagatgaaaatgtggctttggaggcttgtgagttttgg
ctgactttggctgaacagccgatttgtaaagaggtattatgtcggcatcttactaagctg
atacctgtgctggtaaatggtatgaaatattcagagattgatattattctgttgaagggg
gatgttgaagaagacgaagctattccagatagtgagcaggacataaggcctcgttttcat
cgttcaaagacggtggctcagcaacatgaagaagatggtattgaagatgatgacgatgat
gatgatgaacttgatgatgatgatactatttctgactggaatttaaggaaatgttctgct
gctgccctagatgtcctagctaatgtatttcgtgatgaacttctgccacacatcttgcca
ctgttgaaggaattgctcttccaccccgagtgggtagttaaagaatctggtatccttgtt
cttggtgcaattgctgaaggctgcatgcagggtatgattccatatcttccagagctaatc
cctcaccttattcagtgcctctctgacaaaaaggctcttgtgcgctccattacatgctgg
actcttagtcgctatgcacactgggtagttagtcaacccccagacacatacttgaagcca
ttaatgactgagttgctaaagcgtatcttggatagcaacaagagagtacaagaagctgcc
tgcagtgcctttgctactctagaagaggaggcttgtacagagcttgttccttatcttgca
tatatacttgacactttggtcttcgcatttagtaaataccagcataaaaacctgctcatt
ctttatgatgctataggaaccctagcagattctgtaggacatcatctaaataaaccagaa
tatattcagatgctaatgcctccattaatccagaagtggaacatgctgaaggatgaagat
aaagatctcttccctttattagagtgcctgtcgtcagttgctactgccttgcaatctggc
tttcttccatactgtgaacctgtgtaccagcgttgtgtaaatctggtgcagaagacactt
gcacaagccatgttgcataatgcacagccagaccaatatgaggctccagataaagatttc
atgattgtggctcttgatttactcagtggtttagctgaaggacttggaggcaacattgaa
cagctagtggctcgcagcaatatcctgacactaatgtaccaatgtatgcaggacaaaatg
cctgaggtacggcagagttcttttgcattgttaggtgacctgacgaaggcgtgttttcag
catgttaaaccttgcatcgctgatttcatgccaattttgggaaccaacctaaaccctgaa
ttcatttctgtgtgtaacaatgccacctgggcaattggagaaatctctatccagatgggt
atagaaatgcagccttatattccaatggtcttgcaccagcttgtagaaataattaacaga
cccaacacaccaaagacgttgttagagaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgcacctct
cttcgaaacataagagacaatgaggaaaaggattcagcattccgtgggatatgtaccatg
attacagtcaaccccagtggagtagtccaagactttatttttttttgtgatgctgttgca
tcatggattagcccaaaagatgatcttcgagacatgttctgtaagattcttcatggattt
aaaaatcaagttggggatgagaattggaggcgtttctctgaccagtttcctcttccctta
aaagagcgccttgcagcttactatggagtttaa
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