Aphelocoma coerulescens (scrub jay): 138103041
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Entry
138103041 CDS
T10543
Symbol
UTP20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
acoe03009
]
138103041 (UTP20)
Ribosome biogenesis [BR:
acoe03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
138103041 (UTP20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
138103041
NCBI-ProteinID:
XP_068857097
LinkDB
All DBs
Position
1A:50451518..50515388
Genome browser
AA seq
2795 aa
AA seq
DB search
MKSKPSAHKSGNTHRFLTFSERLSNINIDIIHRIDRTGSYAEEVETYFFEGLRKWKELNL
TQHFVKFYNEVANKCQSFNQLVYHQSAVVQSLKTHLQVEGSLAYQPLLNLVVQLARDLQA
DFYPHFHDFFLAITKLLDTQDTELLEWAFTSLSYLYKYLWRLMVKDIHNIYSLYSTLLAH
HKLHIRNFAAESFVFLMRKVSDKNALFNLMLCDLGEHPEKVEGVGQLLFEMCKGVRNMFH
SCAETAMKLVLLKLGPVTEEEIELPWVAVGEAFKQMIRSAAVHIHKDHFDIVFKCLEESL
LDLQRKMTKVNCSVASEQMERILQAYLILVEHANGSKISLPEDVCQVLIKMLQTPYLSSS
CRKMLLNTISAFLLAENVLLPDSLTKEAIQKVFASGFERHFLLDFSEAMFTMKQFERHFL
PCFLEYIEHCFSGTDAITKDEAVAILAKLILVKAEPPTIGSMAFEKYPLVFSEASVSSNT
RQQTSKRRGEKAEVPVLDHVLSLIHLPEKEDITDLSQSWVALVVLPHIRPMNKDHILPRV
TSFIDSLFTAIDKGSLCKGSLFVACQAVSTLLSLVESAEVLHLLPVERVKSLVTTFPSDP
SALLLADLYYTRLALCGCQEHLSQGNLMDLFEKLHPNISTGVSKVRLLTVRILNHFDNPP
STQIEGDGTGEFQPVFAILLQAELVPATVNDYREKLLHLRKLRCDIVQPAIPSGSLQEVP
LRYLLGMLYVNFSPLWDPVIELITSHAKEMENKQFWKVLYEHLERAATYAEMELQNELDE
QEESIAETESEKIPEGQVGTVFLEQLRSRTDCSERLDHTNYRFLLWKALDKFPDRVEPRS
RELSPLLLRFIRNEYYPADSLVAPSQDLRKKTSGTIAAKQMPAEEVNDVAMEEEEEEEEE
KEEGEPISVGLPKKKTRRAAAKQLIAHLQVFSKFSNPRALYLEPKLNALYTQLLSHQDQN
VQRIALDCIMTYKHPHLLPYRENLQRLLEDKSFKEEIVHFSISEETTVVKGEHRPDLIPV
LMRILYGRMRNKTGSKTQGKSSASTRMSIVLRFLAGSLPEEIRMFLDLLFEAVKQFSDGP
CQTAVLQSMSDLDLAKVLPLGRQHSLFNGLEVVLKNMGHLIQQYLPEILQILLCMTAVVS
CILQQREKVQPRLINPLKNLRRLGLKLVAEFFSDYETYSFSVEEIDAVFHAVVWPQVCRL
ASESQYSPTFLLKLIHTWSKNPRYFPLLAKQQPDHPESDILSNVFAVLSAKNLSEATSSL
VMDIADSLLNSPDFEPTEQVSSLSVTGCVVMVTGDVTEEPLSLGCRLVLPHVPAILQYFS
KTMLNVEKVKKKKYRAQVSKELSILSKISKFIQEKSQNSVLVSLLLPFLYQNNMEQGTQI
DILETVQNLLRHCSNPTSFLKPLAKLFSVIQNKLSRNKLCLVFQTLSDLDSKLKYITDVV
KLNAFDQRHLDDIDFDVRLAAFQSIAAHIKEMQAVDTDFLIAVMHNCFYTIQLGDMALSD
NASLCLTSFIHRLAEISHTEDEYKELIQHTLLESVRRGLKSKTESIQQDYTSLLSCLIQT
FPANPEFQDLVQLTNRHDPDMDFFENMKHMQIHRRARALRKLAKQLTEEKLVLSSKSLQN
YIMPYATTAIFSEKMLKHENMVTASVEVVGAVCRHLSWSAYLYHLKHFIHVLQTGQIGTK
LGVSLLETVLEAFHFDHKTLEKQLVTIDNQEAAAMDLEPVVEAEEAMELEQSEGEEEEVE
EKNGKNLSEKPAEPEQAAEPSENAEQVTKPVSFLPRNKEELEYLIKHIQETVTVNILPKL
HRCIVAKVKRDEEHKLVKSNVVNDDEVVRVPLAFAMVRMMQCLPQEVMEANLPSILLKVC
TFLRNRFQEIRDVARNTLIKIMEVLGVHYLLYILKEMRSALIHGYQLHVLTFTVNLLLKG
LTTRLSAGDLDPCLDILIEIFNQELFGNVAEEKEVKGIVSKIMEARKNKSYDSYEILGKF
IGRGQVTKLILPLKETLESTTSLKIVRKVHEALRHIMAGLIFNSDMNAESLLLLSHGLIS
ENLPLLTEKAKKKVTPPPDPRLQPESCLLLQPTPTRGGQKARISSRTNTYILVDSGLRLL
HMSLKRSKVNSSEEHALEMLDPFVQLLIDCLKSMDVKVITGALQSLVWILKFPLPSVNTN
MESLIKQLFLLLKEFAKTGIAKGQNFHLVVSCFKCVTILVKNVKSQITSKQLQVLLGFAE
EDIYDSSRQATAFGLLKAILSRKLIVPEIDDVLQKVAQLAITGQSEPVRVQCRQIYLKYI
LDYPLGDKLKPNLDFMLAQLEYEYETGRESALEMIAYLLDMFPQDLLHKYCGLFFLSLCM
MMINDDSAKCKKMAALTCKSLLSKISNEKQDLMFSLVAEWFHSKKSSHRRLAAQACGLFV
EVDGVMFERRLEAVLTLVEQEINPSKFENITEEEEEKAADRLLFSFLVLVKKLITECNLI
QLTKNSDVVSSIWDHVQSHLWYPHSWVWLTATEIFGLLFASYKPEDLVNKWKERKSGKRK
KTPAELSASIVFLTAELDKKMKELVFAFCHQLQSKFLDMSLSEQVIKNLLFVAKVVYLLA
PASEEGKEADGELSCEVEEQEVSEDEKDTSAQGEEEREDTQEKGQPATLLWLMKKLSVMA
KREAAYSPKVPLKRSCIFKFLGAISVDLGQDRIKPYLPTILTPLYRELNSNYAEQDPTLK
NLSQEIIELLKKLVGLEAFSLAFSSVQKQANQKRAMRKKQRALQTVANPDIAARRKLKRH
KNKAETRKRKIESLRPMYKAKRHRSHALKDLAMVE
NT seq
8388 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcaagccctcggcccacaagtcggggaacacccaccggtttcttaccttttcg
gagcgcctaagcaatattaatatcgatattattcatcggattgaccgaactgggagctat
gctgaggaggttgaaacctactttttcgaaggactgcggaaatggaaggaactgaacctc
actcagcattttgtgaaattctacaatgaagtggccaacaaatgccagtccttcaaccag
ctggtttatcaccagagtgctgttgtgcagagcttgaagacacatttgcaagtcgaaggc
agtcttgcttaccaacccctattaaatctggtggtgcagctggctcgagatcttcaggct
gacttctatcctcactttcatgacttcttcctggccattaccaaattactggatacacag
gacacagagctgctagaatgggcttttacctctctttcctatctctacaagtatttgtgg
agattgatggtgaaggacatacacaacatatacagcctgtacagcaccctgctggctcac
cacaaactccacatcagaaattttgctgctgaaagttttgtctttctgatgagaaaggtt
tctgataaaaatgcactcttcaatttaatgctctgtgacctgggagagcaccccgaaaag
gtggaaggtgtaggacagctgctttttgagatgtgcaagggtgttcgaaacatgttccac
tcctgtgcagagacggctatgaagttagttctgttgaagctgggacctgttactgaagaa
gaaattgaactaccatgggtagctgttggagaagccttcaagcaaatgatcagatcagct
gcagtgcatatccataaagatcattttgacattgtcttcaagtgtctggaggagtcactc
ttagatttgcagaggaaaatgactaaggtcaactgctctgtggcttcagagcagatggaa
aggattctgcaagcttatctgatcttagtggaacatgcaaatggatccaaaatctccctg
cctgaagatgtctgtcaggttttaataaaaatgttacaaacaccctatctctcatcatct
tgccgcaagatgctgctgaacaccatttctgcgttcctgttggctgagaatgttttgttg
ccagattctttgaccaaggaagctattcagaaggtatttgcaagtgggtttgaacggcat
tttcttttggacttctctgaagcaatgttcacaatgaagcaatttgagaggcattttctc
ccatgctttctagaatacattgaacattgcttctctggcacagatgccatcacaaaggac
gaagctgtggcaattctggctaaactcattttggtgaaagcagagcctcctaccattggt
tcaatggcatttgaaaagtatcctcttgttttcagtgaagcatctgtcagctctaataca
aggcaacaaacaagtaaaagacgaggagaaaaggcagaagtaccggtgttggatcatgta
ctgtctttaattcatttaccagagaaggaagacatcactgacctttcacagtcttgggtt
gccttggttgtactgccacatattagaccaatgaacaaagaccacattctgcctcgtgtg
acaagttttatagactctctcttcacagccattgacaaaggaagcctctgcaaaggaagc
ctgtttgtggcctgccaagctgtaagtactctacttagtttggtggagtctgctgaagta
ctccatttgttacctgtggagcgtgtcaagagcttggtgaccactttcccttcagacccc
tctgcgctgctgttggctgatctctattacacgaggctggcattgtgtggctgccaggaa
cacctttcccaagggaacctaatggacttgtttgagaagttgcatcctaatatttccact
ggtgtttccaaggtccggctgttgactgttcgaattctaaaccattttgataatccacct
tctacacagattgagggtgatggcacaggggaattccagccagtatttgccatattgctc
caagcagaacttgtgccagcaacagtgaatgattacagagagaaacttctccatttgagg
aaactaagatgtgacatagtgcagcctgcaataccaagtggatctttgcaggaggtgcct
cttcggtatttactgggaatgctttatgttaacttcagccctctctgggatcctgtaatt
gaactcataacttctcatgcaaaggaaatggagaataaacagttctggaaggtcctgtat
gaacatttggagagggctgctacctatgctgaaatggagctacaaaatgaactagatgaa
caggaggagagcattgctgaaacagaaagtgagaagataccagaaggacaagtggggact
gtctttctggagcagctgaggagtagaacagattgcagtgaacggctggaccacacaaat
taccgtttcctactgtggaaagcactggataagtttccagacagagtggagcctcggtca
agggaactttccccacttcttttgagattcattcgaaatgagtactacccagcagattcc
ttagtggctccatctcaggatctcagaaagaaaactagtggtaccatagcagcaaaacaa
atgcctgctgaagaggtgaatgatgttgctatggaggaagaggaggaggaggaagaagaa
aaggaagaaggggaaccaattagtgtaggactaccaaaaaagaaaacaagaagagctgct
gctaagcaactaatagcccacttacaagttttctcaaaattctcaaatcctcgtgcattg
tatctggagcctaagttgaacgccttgtatacccagttactgtctcatcaagaccagaat
gttcagagaatagctcttgactgtataatgacatacaaacatcctcatctactaccatac
agggagaacctgcaaaggctactggaggacaagagctttaaagaagagatagtccatttc
agtatttctgaggagaccacagtagtaaaaggagagcatcgaccagatctcatccctgtt
cttatgagaattctctatggcagaatgagaaacaaaacagggagcaaaacacagggcaag
tcttcagcgagcactcgcatgtcaattgttctgcgatttctggccggctcactgccagaa
gagatacggatgttcttggatctactctttgaagctgtgaagcaattcagtgatgggcct
tgccagactgcagtccttcaaagtatgtcagacctggatttagctaaagtcctgcctctt
gggcgtcagcatagcctcttcaatggtcttgaagttgtgttgaaaaacatgggtcatttg
atccagcaatatctgcctgaaattctacagattctgctctgcatgactgccgtggtatcc
tgcatcctccagcaaagagagaaggtccaacctaggttgattaatccactgaagaatttg
agacgtcttggtctcaagcttgtggcagagtttttttctgattatgagacctacagcttt
agtgtggaagagattgatgcagttttccatgctgtggtatggcctcaggtctgcagattg
gcttcagagagtcaatattctcccactttcctgctcaaactcattcacacctggagtaag
aaccccagatatttccctttgctggccaagcagcagccagatcacccagagagtgatata
ctgtcaaatgtatttgctgtgctgtcagccaagaatctgtctgaggccacatcgagtctt
gtgatggacatcgctgatagccttctcaacagcccagattttgaacccacggagcaggtt
tccagtttgagtgtgactggctgtgttgtcatggtcactggagatgtgacagaagagccc
ctcagtctaggttgccggttggtcctgcctcatgttcctgccatacttcagtacttcagc
aaaacaatgttaaacgtggaaaaggtgaaaaagaagaagtacagagctcaagtcagcaaa
gagctgagtatactttccaagatcagcaaatttatacaagagaagagtcagaattcagtg
cttgtgagccttctcctccctttcctttatcagaataacatggagcagggtacacagatt
gacattctggagacagtgcagaacttgctgaggcattgctcaaaccctacaagctttctc
aaaccactggcaaagcttttttctgtcatccagaacaaactgtctcgaaataagttgtgc
ttggtatttcagactttatctgacttggacagtaagttgaagtatattactgatgttgtt
aagctgaatgcctttgatcagcgacacctggatgatatcgacttcgacgtgcgtctggca
gcctttcagtcaattgcagcccacatcaaggaaatgcaagcagtggatactgacttcctc
attgctgttatgcacaactgcttctataccatccagcttggggatatggctcttagtgac
aacgcaagcctttgcttgaccagtttcatccaccgactggcagaaatcagccacacagaa
gatgagtacaaggagctaatccagcacactctcctggagtctgtgagaaggggtctgaag
agtaagactgagagcatccagcaggactacacatcgctgctttcctgcctcattcagaca
ttcccagcaaatcccgaattccaggatttggtccagctgaccaaccgccatgatcctgac
atggacttctttgagaacatgaaacacatgcagatccacaggagggcaagagctctgagg
aaactggcaaagcagctcactgaagaaaagcttgtgctgtcttctaaatccctccagaac
tatatcatgccttatgctacaactgccatttttagtgaaaaaatgcttaagcatgaaaat
atggtaacagcctcagttgaagttgttggagctgtctgcagacatctttcatggtcagca
tatttgtaccacttaaagcatttcatccatgtcttgcaaacaggacagatcggtacgaag
ctgggagtcagcttgttagagacagtgctggaagcctttcacttcgatcataaaacactt
gaaaagcagcttgtgaccattgacaaccaagaagctgctgccatggaccttgagccagtg
gtggaggctgaagaagccatggagctggagcagagtgaaggggaagaggaggaagttgaa
gaaaagaatgggaagaatctctccgagaagccagcagaacctgagcaagcagctgagcca
tctgaaaatgctgaacaagtgaccaaacctgtttcgttcttaccccgaaataaagaggag
ctagagtatctgatcaaacacattcaagaaacagttacagtcaacatcttgcctaaattg
cacaggtgtattgttgcaaaggttaaaagagacgaggagcacaagcttgtgaaatccaat
gttgtgaatgatgatgaggtggttcgtgttccattagcttttgcaatggtcagaatgatg
cagtgtctcccccaagaagtgatggaagctaacctaccgagcatcctgctgaaagtctgc
acatttctgagaaacagatttcaggaaatacgggatgttgcccgtaacaccctcattaaa
atcatggaagtgttgggagtgcactaccttctgtacatcttaaaggagatgaggtctgcg
ctcatccatgggtaccagctccatgtgctgactttcactgtgaacctgttactgaagggc
cttactaccaggctcagtgctggtgatttggacccctgcttagatatcctgattgagatt
ttcaaccaagagttgtttgggaatgtagctgaagagaaagaagtgaagggaattgtctcc
aaaatcatggaagcccgcaaaaacaagagttatgattcctatgaaattcttggaaagttc
ataggaaggggccaggtgacaaaacttattctgccactgaaagagactctggagagcact
acaagcttgaagatagtccggaaggtgcatgaggcactgcgtcacatcatggcagggctg
attttcaactcggacatgaatgcagaatccctcctcctcctcagtcatggtctcatcagt
gaaaatttgcctctgctcactgagaaggccaagaagaaagttacccctcctccagatcct
cggctgcaaccagagagctgcctgctgctccagcccactcccacaagaggagggcagaaa
gcacgtatcagcagcaggactaacacatatatcctggttgattcaggacttcggctactg
cacatgagcctgaagaggtccaaagtaaattcttctgaagaacatgctttggaaatgtta
gacccttttgttcagctgcttatagactgcctgaaatctatggatgtcaaggtgataact
ggtgctctgcagtccttggtatggattttaaagttccctttgccttctgtcaatacaaat
atggagtcactgatcaagcagcttttcctcttgctgaaagagtttgccaagacagggata
gccaaaggccagaatttccaccttgttgtgagctgtttcaaatgtgtaacaatacttgtg
aagaatgtcaagagtcagataacaagcaaacagctccaagtgttgcttggctttgctgaa
gaagacatttatgattcatcacgccaagccactgcctttggccttctcaaggctatttta
tccaggaagctgattgtccctgaaattgatgatgtgctgcagaaggttgcccagctggcc
atcacaggtcagagtgagccagtgcgagtccagtgcaggcagatttacttaaaatacatt
ctggactacccccttggtgacaaactgaaacccaatttggatttcatgcttgcacagctg
gagtatgagtatgaaactggtagggaatcggcactggagatgattgcgtacctcctcgac
atgttcccacaggatctcctgcacaaatactgtgggctgttttttctctctctttgtatg
atgatgataaatgatgactcagccaaatgcaaaaagatggcggctttgacgtgtaaatct
cttctcagtaagatcagcaatgaaaaacaagatctgatgttttcgctggtcgcagagtgg
tttcacagcaaaaagagctcacacaggaggttggctgcccaggcatgcggtttgtttgtt
gaagtggacggagtaatgtttgagcggcggcttgaagcagtcctcactttggttgaacaa
gaaatcaacccaagtaaatttgaaaatataactgaagaggaagaggagaaggctgcagat
aggctgctattcagctttcttgtgctggtaaaaaagctaatcacagagtgcaacttgatt
caattaaccaagaacagtgatgttgtgagcagtatctgggatcatgtccagtctcacctg
tggtatcctcacagctgggtctggctgacagccactgagatctttggcttgttgtttgcg
tcttataagccagaagatcttgtcaacaaatggaaggaaagaaagtcagggaagagaaaa
aagacaccagcagagctgtctgcatccatagtcttcctgactgctgaactggacaaaaag
atgaaggaactcgtgtttgcattctgccatcagctgcagtccaagttcctggacatgtct
ctgagtgagcaggttataaagaatttactttttgtggccaaagttgtttacttgctagcc
ccagcctcagaagaaggtaaagaggcagatggagaactcagctgtgaagtggaagagcag
gaggtctcagaggatgagaaagatacttctgctcaaggagaggaagaaagagaggacacg
caagagaaaggccagccagccacactgctgtggttaatgaagaagctctctgtcatggca
aagagagaagcagcatattcccctaaggtccctttaaagagaagctgcatctttaagttc
ctgggagcaatctcggtggatctggggcaagacaggatcaagccctaccttccaacaatt
ctcacccctctgtacagggagctgaacagcaactatgcagagcaagatccaacactgaag
aacctttcccaagaaatcatagaacttctcaagaagttagtgggactggaggccttttcg
ctggccttttcttctgtgcagaaacaggccaaccagaaaagagcaatgaggaaaaagcag
agggctttgcagactgtagcaaatcctgacattgctgcaaggaggaagctgaagagacac
aagaataaagcagaaaccaggaagagaaaaatagaatccctgcgccctatgtacaaggcc
aagcgacatcgaagtcatgcactgaaagatttggcaatggtggaatga
DBGET
integrated database retrieval system
