Aphelocoma coerulescens (scrub jay): 138103706
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Entry
138103706 CDS
T10543
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
acoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138103706 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
138103706 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138103706 (LSM5)
03041 Spliceosome [BR:
acoe03041
]
138103706 (LSM5)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138103706 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
138103706 (LSM5)
Spliceosome [BR:
acoe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
138103706 (LSM5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
138103706
NCBI-ProteinID:
XP_068858297
UniProt:
A0A7K7CQE2
LinkDB
All DBs
Position
Z:60459139..60462790
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AA seq
91 aa
AA seq
DB search
MAASAVSNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagcgcggtgtccaacccgtctcagctcctgccgctcgaacttgtggacaag
tgcataggctcacgcattcacattgtgatgaagagcgacaaagaaattgttgggacactt
ctaggatttgatgattttgtcaatatggtgttggaagatgttacagaattcgagatcaca
cctgagggcagaagaatcacaaagctggaccagattctgctaaatgggaataacataaca
atgctggttcctggaggagaaggacctgaagtgtga
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