Aphelocoma coerulescens (scrub jay): 138103989
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Entry
138103989 CDS
T10543
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acoe03041
]
138103989
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138103989
Spliceosome [BR:
acoe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
138103989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
AAA_19
Ank_2
AAA_22
HA2_N
nSTAND3
ATPase
PhoH
Ank_4
ResIII
AAA_16
AAA_23
AAA_29
AAA_30
ABC_tran
UvrD-helicase
AAA_7
Motif
Other DBs
NCBI-GeneID:
138103989
NCBI-ProteinID:
XP_068858773
LinkDB
All DBs
Position
Z
Genome browser
AA seq
1428 aa
AA seq
DB search
MSRHRRVARRQPGGAAGGSAAAAAVRARAEALREVGVDEEVEMAVQLALERFRSGDEAEM
EFPSSFTSTERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSEPTHAAMACDLALRTK
HAVRSLIQSFPVTNKERTELLPRTERGGARAVESENKELNKTSGRLNDGIPQVPVKRGES
EFDSFRQSLPVLEKQEEIVQTIKDNKIVLIIGETGSGKTTQIPQFILDDCYKNGAPCRVF
CTQPRRLAAVAVAERVAAERREKIGQTVGYQLRLESRVSPKTLVTFCTNDMLLRTLMAGD
STLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQNNLKLILSSAALDANLFIRYFGSCP
VIHIQGRPFEVKEMFLEDILRSTGYTNKGMVKYTKEKQQEEKQKTTLAEWCSAQENTNRL
ACRRQKSVPRANEEYSLLDDGGDAVFNQLAEKDVNCLEPWIVKEMDSCLSDIWLHKDIDS
FAQVFHLILTENVSVDYRHSETGATALMISSGRGFLSQVEQLISMGASIHCKSSNGWTAV
DWARRFRQTEVVDLLESYSASFGFGNLDESSLVQKSGSDLSAEDRELLTAYHHSFDDEKV
DLDLIMHLLHSICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAPRYQVFMLHSS
VQTLDQKKVLETPPSGVRKIILSTNIAETSVTVSDVVFVIDSGKVKEKSFDALSRVTVLK
MGWISKASAIQRKGRAGRCQPGVCFRLFSRLRLQNMLEFQSPELLRMPLQEICLYTKLLA
PINCPVVDFLMKAPDPPPAVTVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKM
VLYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRAF
QAWQKARGDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTN
SENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQSQYKKVPPANGQA
AAIQALPTDWLIYDEMTRARKTANIRCCSAVTPVTVSLFCGPARLPSNALQASSAFRGGG
VSNDSSDSEMEDKTTANQALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKP
WSQVDETTVRAITAVLSAEERSAGLQQPSGIGQRPRPVTCEELPLASTWKSTNSRKSSTE
TEFSDSSSAEKVSVKSTSPALHQPKKYKEEDILLSKRSSDDGSAQSSVKPADSGSCPSPC
ASPSSPVSAKGCRSPSPRQNVPVRYFIMKSSNLQNIDISQQKGIWSTTPSNEGKLNGAFW
ESSLVYLIFSVQGSGCFQGFARMGSAIGREKSQDWGSAGFGGVFKVDWIRKESIPFQFAH
HLLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGKNLTERAK
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggcgggtggcgcggcggcagcccggcggggccgcggggggctcggct
gccgccgccgcggtgcgcgcccgggccgaggccctcagggaggtcggcgtggacgaggag
gtggagatggcggtgcagctcgccctggagcggttccggagcggggacgaggcggagatg
gaatttccttctagtttcacgagtaccgaaagagcgtttgttcaccggctctgtcagtct
cttggactggtgtctaaaagcaaaggaaaaggagcaaatcggtacctgactgtaaggaag
aaggatgtctccgaaccgacacatgcagccatggcttgcgacttggctctccgtacgaaa
cacgccgttcggagcctcattcagagctttcccgtcacaaacaaggagcgcacagaactc
ttgccaaggacagagcgaggaggtgcgcgtgctgttgaatctgaaaacaaagaattgaac
aagacaagcggtcgacttaatgacggtatcccccaggtcccagtgaaaagaggggaatca
gagttcgattccttcaggcaatcactaccagtccttgaaaaacaggaagaaattgtccaa
acaataaaggacaataaaattgttttgattataggagagacgggatcgggaaaaactact
caaatccctcagtttatccttgatgactgctacaagaatggagctccctgtcgtgtgttt
tgcactcagccgagacgtttagcagctgttgctgtggctgagagggtggcagcagaaagg
agagagaagattggccagacagttggttaccagctccggttggaaagcagggtttctcca
aagacactggtaacattctgcactaatgacatgctccttcgcacgctgatggcaggagac
agcaccctctccactgtgacacatgtgattgtggatgaagtacatgagagggataggttc
agcgacttcttgctaataaaactgagagatgtgctgcaaaaccagaataatttaaaacta
attctttctagtgctgctctagatgcaaatctttttattaggtattttggaagctgccca
gtaatacacatccaaggaagaccttttgaagttaaagagatgtttctggaggacattttg
cgaagcactgggtatacaaacaaagggatggtaaagtacacaaaagagaagcagcaagaa
gagaaacagaaaaccactcttgctgagtggtgttcagctcaagaaaacaccaacagactg
gcatgtcggagacaaaaatcagttccaagggcaaatgaagagtacagtctgctggatgat
ggtggtgacgcagtatttaatcaactggctgaaaaagatgtgaattgccttgaaccgtgg
atagtaaaagaaatggattcctgtctgtctgacatctggttgcataaagatattgattcc
tttgctcaggtgttccatctaattttaactgaaaatgtcagtgttgattataggcacagt
gagaccggcgcgactgctctgatgatttcttcagggagaggctttttgagtcaagtagaa
cagctgatcagtatgggagcaagtatccactgcaaatcatccaatggctggacggctgtg
gactgggctaggcgcttcagacagacggaggttgttgatctgttggaatcctacagtgct
tcattcggatttggaaatctggatgaaagttccctggtccaaaaaagtggtagtgacctt
agtgcagaggacagagagctactgacagcttatcatcacagctttgatgatgaaaaagtg
gatctggatctgatcatgcacttactccacagcatctgtcatagctgtgatgcgggagcc
attttaatatttcttcctggatatgatgagatagtgagcctgagggaccgcattcttttt
gatgacaagagatttgctgataatgctcccagataccaagttttcatgcttcattcgagt
gtgcagactttggatcagaaaaaagtgcttgaaactccaccttctggcgtccgcaaaatt
attctttctacgaatattgcagaaaccagcgtaacagtcagtgatgttgtatttgtcatt
gactcaggcaaggtgaaagagaagtcttttgatgcactgagccgtgttacagtgctaaaa
atggggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcag
cctggagtctgttttcgtctcttcagcaggctccgattgcagaatatgttggaatttcag
tctccagaacttctaagaatgccacttcaggagatttgtttatacacaaagcttctggct
ccaattaattgtccagttgtggactttcttatgaaagctcctgatcctccgcctgctgta
actgtcagaaacgctgtgcacatgcttaagaccatagatgccatggacccttgggaagat
ctcactgagcttggttaccacctcactgaattacctgtagagccacacctgggtaaaatg
gtgttgtatgctgttgtgctgaagtgcctggatcctgttctgaccattgcctgtgctctt
gcctgccaagacccttttgtgctgcccacgctggcctcccaaaagcgtgcagccatgctg
tgcaggaagcgttttgctgcagggacgttcagtgaccacatggccctgctcagggctttc
caggcgtggcagaaggcgcgcggtgatggctgggagagagccttctgtgaaaagaacttc
ctgtcccaagccacgatggaaatcatcgtaggaatgagaacacagctgctcggccagctt
agagcctcaggttttgtgagagccagaggaggagctgatattagagatgttaatactaac
tctgagaactgggctgtaattaaagctgccttagtggccgggatgtatcccaatcttgtg
cacgtagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcgatttcat
cctacctctgttcttggtcaatctcagtataaaaaggttcccccagcaaatggacaagct
gcagccatccaggccctccctacagactggcttatctatgacgaaatgaccagagctcgc
aagacagcaaacatcaggtgctgctctgctgtgacgcctgtcaccgtgtccctcttctgt
gggccagccagactgccaagtaacgccttgcaggcatcctcagccttccgagggggaggg
gtatctaatgatagcagtgacagtgagatggaggacaagacaactgctaatcaggcacta
ctgaagctggatgaatggcttcatctcaaactggaccctgaagctgctggcatgctgttg
caactcaggcagaagtggcacagtttgttcctgcgtcgtatgcgagctccttctaaaccg
tggtctcaagttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaa
cggtctgcaggtctgcagcagccttcaggaatcggccagagaccgagacctgtgacttgt
gaagaacttcctttggcatctacatggaagtcaaccaacagtagaaaaagctcaacagaa
actgaattctctgactcctctagtgctgaaaaagtttcagtgaaatctacatctcctgca
ctccaccagccaaagaagtacaaagaagaagacattttgctctccaaacgatcctcagat
gacggatcagctcagtcctcagtgaagcctgcagacagcggtagctgtcccagcccctgt
gctagtccttcttctccagtatctgcaaagggctgcagatctccttcaccaagacaaaat
gtgcccgttcggtactttataatgaaaagtagcaacttgcagaacattgatatttctcaa
cagaagggaatatggtccactacgccaagcaatgaagggaaactgaatggagccttttgg
gagagcagcctggtttacttaatattttctgttcaagggtctggatgctttcaggggttt
gctagaatgggttcagcaattgggcgtgagaaaagtcaagactggggatctgctggtttc
ggaggtgtgtttaaggtggactggatccgaaaagaaagcattccttttcagtttgcacac
catttgctcaacccgtggaacgacagtaagaaagtacagataagtagagatggccaggag
ctggaaccacaagttggagagcagttgctgcagctttgggaccgtattcctttggcagga
aaaaacctgaccgagcgtgccaagtag
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