Aphelocoma coerulescens (scrub jay): 138104026
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Entry
138104026 CDS
T10543
Symbol
TNRC6B
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138104026 (TNRC6B)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138104026 (TNRC6B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
138104026
NCBI-ProteinID:
XP_068858821
LinkDB
All DBs
Position
1A:complement(53107257..53229829)
Genome browser
AA seq
1867 aa
AA seq
DB search
MQTDEGEILEEGSPKVSEMEHEDFVMEGHGKTPPPGEENKQEKEQEREEQLMEDKKRKKE
DKKKKDSAQKVTDQKTKVPEVTKPSLSQPVAASPIGNSPSPPVNGGNNAKRVAVPNGQPP
SAARYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPSPAAPGANPNNAQPVT
GALLQSDSGTATDSAIGGAAASNYANSTWGPGASSNSGTNANPTHIWDKVIVDGSDMEEW
PCIASKDAESSSENTTDNNSASNPGLEKNALPGSTTSNKGKGSQCQSGSAGNECNLGAWK
SDPKAKSVQSSNPAAESNNGLGNWRNLSGQDRISPGSGFSNFNPNSNPSAWPALVQEGNS
RKGTLESDSGSSNAQISTVGQTSREQQSKMENAGVNFVSGREQAQIHNTDGPKNGNTNSL
NLSSPNPMENKGMPFEMGLGNPSRSTDTPSQSTGERKTGSVGSWGTARGSSGTDTVSGQS
NSGNHGNNGKDREDSWKGASVQKPNGSRSDSWDNSNRSTGGGSWNFGPQHANESKWGEGN
KLTSGVSQGEWKQLSGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNSQAPCWGR
SSSSAGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSN
TGWGQTQIKQDTVWDIEEMPRPEGKSDKGTEGWESSATQTKNSGGWGDVPSQSNQNKSGW
GELSTPTEWKDPKNTGGWNDYKNSNSSNWGGGRQEEKSSSSWNDSSSKDQGWGGRQSNQG
WSSGKNGWGEEVDQTKNSNWESAGNKPVSGWGEGGQNEIGTWGNGANTSSASKGGWDDCK
RTSTWNETGRQPNSWNKQQQQHQQQQQESSGSWGPPPQTPSNGRPPNPNWNSGPQPAAPK
EEEPSGWEEPSPQSISRKMDIDDGTSAWGDPSSYNYKNVNLWDKNSQGGQAPREQSLPTP
MTSKSQASVWSKSTPPAPDNGTSAWGEPNETSPGWGEVDDTGASTTGWGNAPSNAPNAMK
SSSKSMQDGWGESDGPVTGTRHSSWEEEEEGGVWNTAGSQGSSSSHNSTSWGQGGKKTQM
KCALKGGNSDSWMNPLSKQFSNMGLLSQTDDIPGSKMDLSVGGLPDKKFEVDKRAMNLGD
FNDMMRKDRSGFRPPNSKDMGTTDSGPYFEKLTLPFSNQDGCLGDEAPCSPFSPSPSYKL
SPSGSTLSNVGLGAIGSGLSPQNFAARQGGNHGLFGNSTAQSRGMHTPVQPLNPSPNIRA
QVPPQFLSPQVSASMLKQFPNSGLNPGLFNMGPQLSPQQIAMLSQLPQIPQFQLACQLLL
QQQQQQQQQLLQSQRKLSQAVRQQQEQQIARMVSALQQQQQRQPGMKHSPSHPVGPKPHL
DSMVPNPLNVGLSDLQTKGQIPGYGSGGFGSSGMDYGMVGGKEAGTESRFKQWTMMEGLP
SVASQDANMHKNGAVVPPGKARGGSPYNQFDIIQGDPLSSHAGPAGDSWLPAKSPPTNKI
GSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTATSPIVDTDHQLLRDNTT
GSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFSDYKSTWSPDPIGHNPTHLSNKMWK
NHISSRNTTGLPRPPPGLTNPKPSSPWNSTAPRSVRGWGAQDSRLGSASTWSDGGSVRPS
YWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYNTKQEAAKAQTALHMCV
LGNTTILAEFATDEEVSRFLAQAQPPTPAATPSAPAAGWQSLETGQNQTDPVGPALNLFG
GSTGLGQWSSGGGGGSSGGDLTGASLWGPPNYSSSLWGVPSVEDPHRMGSPAPLLPGDLL
GGGSDSI
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactgatgagggagaaatactggaggaaggcagtcccaaggtcagtgagatggaa
catgaggattttgtaatggaggggcatggcaagactccacctcctggtgaagaaaacaaa
caagagaaggagcaagaaagggaagaacagttaatggaagacaagaaaaggaagaaagag
gataagaaaaagaaggactctgctcagaaggtcacagatcaaaaaaccaaagtgcccgaa
gtgacgaaaccaagtttaagccaaccagtggctgccagcccaattggcaactctccatcg
ccaccagtcaatggtggcaacaatgccaaaagggtggcagtgccgaacggacaaccgcca
agcgccgcccgctacatgcctcgggaggtgccgccgcgattccgttgccagcaggaccac
aaagtgttactgaaacgtgggcagccccctccgccatcctgtatgctccttgggggtgga
gcagggcctccctccccagcagcaccaggagcaaacccaaacaacgcacaaccagtgaca
ggagcactgctgcagagcgacagtgggactgcaacagattcagcaattggaggtgctgct
gcttcaaattatgcaaattccacttggggtcctggagcctcctccaacagcggcaccaac
gccaacccaactcacatctgggacaaggtgattgtagacgggtctgacatggaagagtgg
ccttgtattgccagcaaagatgctgagtcttcttccgaaaacaccaccgataacaacagt
gcctcgaaccctggcttggagaagaacgctctgccaggaagcaccactagtaacaaagga
aaaggaagccagtgccagtctggaagcgctggaaacgaatgtaatcttggggcctggaaa
tctgatcccaaggctaaatctgttcaatcttccaaccctgctgccgagagtaacaatgga
ctaggtaattggaggaacttgagtggacaagacagaatcagtcctggttctggcttcagc
aactttaacccaaatagcaacccatctgcttggccggcactggttcaagagggcaattct
aggaaaggaactctggaatctgatagtggtagctccaatgcacagattagcacagtaggt
cagacctctagggaacagcagtcaaagatggaaaatgcgggtgttaactttgtctctggc
agagaacaggctcaaattcataacactgatggaccaaaaaatggaaacactaactccttg
aacttaagttcaccaaaccctatggagaataagggaatgccctttgaaatgggcttgggg
aacccttccaggagcactgacaccccttctcaaagcactggagaaagaaagactgggagt
gttggatcttggggtacagctagggggtcttctggaactgacacagtctctgggcagagc
aattctggaaaccatgggaacaatggaaaggatagagaggactcctggaaaggagcttct
gttcaaaaacctaatgggtcaagaagtgattcttgggataacagtaaccggtctacgggt
ggtgggtcttggaactttggccctcagcatgcaaatgaaagcaaatggggtgaagggaac
aaattaacatctggggtctctcagggagaatggaaacagctgtctgggtctgatgaactg
aagattggagagtggagtggtccaaaccaaccaaattctagcactggagcatgggacaat
caaaaaggccaccctcttcctgaaaaccaaggcaattcccaggctccctgttggggaaga
tcttccagctctgcgggaagtgaggttggaggtcaaagcactggaagcaaccacaaagca
ggaagtagtgacagtcacaattctggacgccgatcatacaggcctacacatcctgattgc
caggcagtcctgcagactttgctgagcaggactgacttggacccccgagtgctttcaaac
accggctggggccagactcaaattaagcaagataccgtgtgggatattgaagagatgcca
cggcccgaggggaagtctgataaaggaactgaggggtgggagagctctgccacacagaca
aagaactcagggggctggggcgatgtacccagccaaagcaatcaaaacaagtctggatgg
ggtgagctctcaaccccaacggagtggaaggaccccaaaaatactggaggatggaatgac
tataagaactccaattcttctaattggggaggaggaaggcaagaagaaaaatcatcttcc
tcttggaatgacagctctagtaaggatcaggggtggggtggacggcaaagtaatcaagga
tggtcttctggaaagaacggttggggagaggaagttgaccaaacaaaaaacagtaactgg
gaaagtgcaggaaacaagccagtgtctggctggggtgaaggtgggcagaatgagattgga
acttggggtaatggtgcaaatacaagctctgcttcaaagggtggatgggacgattgtaaa
agaacttcaacgtggaatgagacgggtcgacagcccaactcctggaacaagcagcagcaa
cagcaccagcagcaacagcaggagtcttctggttcctggggtccaccgccccaaactccg
agtaatgggcggcctccaaacccaaattggaacagcggaccacagccagctgcccccaaa
gaggaggagcctagtggctgggaagaaccttctccacagtcaatcagtcgaaaaatggat
attgatgatggcacttcagcgtggggagatcctagcagttataactacaagaatgtgaat
ctgtgggacaagaactcacaaggaggacaggccccacgggagcagagcctgcctactcca
atgactagcaaatcacaagcatcagtctggagcaaaagcactccacctgctccagataat
ggtacgtctgcctggggtgagccaaatgaaaccagtcccgggtggggtgaagtagatgat
acaggagcatcgactacaggctgggggaatgcaccttccaacgccccgaatgccatgaaa
tctagttctaaatctatgcaagatggctggggagagagtgatgggccagtgacaggaaca
cgtcattccagctgggaagaggaggaggagggaggagtctggaacacagcaggctctcag
ggaagcagttcctcccacaactcaacaagctggggacaaggaggaaagaaaacacaaatg
aagtgcgcattaaaaggaggaaatagtgattcgtggatgaaccctttatccaaacagttt
tcaaatatgggcttgctaagtcaaactgatgacattccaggcagtaagatggacttgtct
gtaggtggtctcccagataagaagtttgaggtagacaaacgagccatgaatctcggggat
tttaatgacatgatgagaaaggatcgatctggtttccgtccacctaattccaaagacatg
ggaaccacagatagtgggccttattttgagaagctgactttgcctttctccaatcaagat
gggtgccttggggatgaggctccctgctctcccttctccccttctcccagctacaagctg
tctccctctggttccacactatccaacgtcggccttggggcaatcggctcagggctcagt
ccccaaaacttcgctgctagacaaggtggcaatcatggtttgtttggaaacagcacagca
caatcgaggggcatgcacacaccagtgcagccactaaatccttcccccaatatccgggcg
caagtgcctccccaattcctttctccccaggtttcggcctccatgctcaaacagtttccc
aacagtggcttgaatcctggtcttttcaatatgggcccccagctttctccacaacagatt
gccatgctgagccagcttccacagattccccagtttcaattagcttgtcagctcctcctt
cagcagcagcagcagcagcagcaacagctgttacagagccagagaaagttatctcaagct
gtgcgacaacagcaggagcaacagattgctcgtatggtgagtgccctccagcagcagcag
cagaggcagcctggcatgaagcattcaccatcccaccctgttgggcctaagccacattta
gacagcatggtacccaatcctttgaatgtgggtctctcagatttacagaccaaagggcaa
atacctggatacggttcaggtggctttggctcaagtggcatggattatggcatggtggga
gggaaagaggctggaacagaatcccgctttaagcagtggactatgatggaagggctgccc
tctgtggcttcacaagatgccaatatgcacaaaaatggtgcagtagtgccccctggaaag
gctcgtggaggatcgccctacaaccagtttgacataatccagggcgacccactcagcagc
catgcaggccctgctggtgatagttggttacctgccaaatctccaccaacaaacaagatc
ggaagtaaatccagcaatgccagctggcctccagagttccaaccaggagtgccatggaaa
ggtatacaaaacattgaccctgaatctgacccctatgtgacccctggaagtgtgctgggg
gggacagccacatctcccattgtagatactgaccaccaacttctgcgggacaacaccaca
gggtctaattcttccctcaacacctcgctgccttcacctggtgcctggccctacagtgcc
tctgacaattccttcaccaacgttcatagcacttcagcaaaattcagtgattacaaatca
acatggtccccagatcccataggacacaatcccactcatctctccaacaagatgtggaaa
aaccatatttcctcaaggaacactacagggctgccccgcccacctcctggcctgaccaac
cccaaaccatcatctccatggaacagcacagcaccccgatcggtcaggggctggggggca
caggactcaaggcttggctctgcatctacttggagtgatggtggctcagttcgtcctagc
tactggctggttcttcacaatctcactccacagattgatgggtcaaccttgaggacgatc
tgcatgcagcatggcccactgctgacattccatctgaacctgacccagggcaccgccctc
atccgatataacaccaaacaggaggcggccaaggcccagactgcactgcacatgtgtgtg
ttgggaaacactaccatcctggctgagtttgccacagatgaagaggttagtcgctttttg
gcacaagctcagccccctacacctgcagcaaccccgagtgcacccgcagcgggctggcaa
tccctggagacaggacagaaccagacagatccagttggacctgctttgaatctctttggt
gggtcaacagggcttgggcagtggagcagtggtggcggcggcggcagcagtgggggtgat
ctcactggcgcttcattgtgggggcccccaaactattcttcaagcttgtggggggtccca
agcgtagaggatccacacagaatgggcagccctgctcccttactacctggagaccttctg
ggaggagggtcggattcaatctga
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