Aphelocoma coerulescens (scrub jay): 138104770
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Entry
138104770 CDS
T10543
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04382
Cornified envelope formation
acoe04510
Focal adhesion
acoe04512
ECM-receptor interaction
acoe04518
Integrin signaling
acoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138104770 (COL4A2)
04518 Integrin signaling
138104770 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138104770 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138104770 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138104770 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
acoe04147
]
138104770 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
acoe00536
]
138104770 (COL4A2)
Exosome [BR:
acoe04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138104770 (COL4A2)
Glycosaminoglycan binding proteins [BR:
acoe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138104770 (COL4A2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138104770
NCBI-ProteinID:
XP_068860078
LinkDB
All DBs
Position
1:24947002..25092701
Genome browser
AA seq
1715 aa
AA seq
DB search
MDISQLPSARIFLCQDTGILLILIEVLLSAVKVDAGGKKYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGYPGITGPKGEVGQRGVTGFPGADG
IPGHPGQPGPRGKPGHDGCNGTAGDPGDSGTPGRSGFPGSIGVQGPKGQKGEPYIIAPEI
ISRYRGDPGDSGFIGFPGPPGTLGIQGPVGPRGQQGRPGPPGPPGPQGPQGSRGLGFYGE
KGEQGSPGPPGPPGLPTRELTGVPPDKHKGERGDPGPRGEAGIPGVLLFAPEKGEEGVMG
YPGQRGLPGISGFPGLSGERGVPGFDGPPGGYGSRGSKGEPGEMGPPGPDSYFPSRIPRK
GARGDPGFPGVSGLPGDRGEEGDRGSPGLPGFSDADGDKPGLPGEMGPKGEKGEIGAPAY
YTGPPGLPGKDGSPGLRGPPGPIGAPGRLFGFKGREGTPGRFGIQGFPGPRGQKGPKGEE
GDCTRCLLGEELRRGSTGPRGPPGFPGTPGQPGRKGEPGDQGPHGLPGYPGAKGFSGPAG
FPGQKGEKGDSLHITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGQPGLPGDAIRGF
PGDPGYPGELGPKGFPGEAGLPGEGFPGPKGFQGPPGEQGQDGIPGPPGLPGLPGEPGQL
DCGQVIEDFPRGDGSEPIWSGAGCVRPPKGSQGKPGLPGATGAKGARGFPGDPGPMGFPG
LNGTRGDPGREGFPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGAPGPKGLPGDVF
GAAAGSRGDVGLPGFPGLKGAPGDQGIPGTRGADGSPGLPGPKGDPGPQGLPGLMGLPGT
PGTHGFPGPPGNRGPDGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGDKGDMGLTGL
PGIRGVTGPPGISGMDGFPGDKGSKGSSGIDGFKGMTGLKGRPGIKGIKGEFGPVGARGD
KGSQGAHGFKGDRGDQGPPGEPPKLMPSMMMEVKGEKGDVGERGTKGFFGLKGSKGMPGL
PGKTGTPGSPGHPSYVAGVKGDIGAKGLTGLKGYPGPAGSPGIRGFPGTTGVRGEKGIPG
ISGHFGTPGSHGEIGDRGDTVNLPGMPGLKGEVGVPGLTGIRGGVGPKGEGGDPGFPGIE
GLKGTQGVPGSVGPEGLPGLVGPPGQQGSPGTPGFPGEKGTPGWPGLPGQAGQPGLRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGTVGDKGEAGEPSRVEGGRGPPGQKGDRGVPGVP
GPFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGPQGQPGIPAPPGSKGESGQT
GRTGEIGPKGSRGDPGSAGRPGLPGFPGLKGRKGEQGVIGFMGTAGFPGDLGPIGPKGDR
GVTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGNIGPQGSPGDMGPQGPPGDPGFRGSPGE
PGLQGRGGIPAPPGSRGEQGGMGFQGPVGFEGQPGRPGSPGPPGMPGRSVSMGYLLVKHS
QSDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLSRFSTMPFLYCNPGDICY
YASRNDKSYWLSTTAPLPMMPVAEEDIKPYISRCSVCEAPAVAIAVHSQEASIPHCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSGDTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacatctcgcagcttcccagtgcacgtattttcctttgtcaggatacggggattctg
ctgatcctgatagaagttttgctgtcagcagtcaaagtggacgctggtggaaagaaatac
acaggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggccagccaggacttcttggatcacagggattcactggaccaccaggattgatg
gggatcccaggagtgcaaggtcccaaaggccacaaaggtgaaagaggatacccgggaata
actggacccaaaggagaagtgggacaaagaggagtcactggattccccggggcagatggc
attcctggtcatccagggcagccaggaccaagggggaaaccaggtcatgatggctgtaat
gggacagcaggtgaccctggtgactcaggaactcccggacgctctggtttccctggtagc
attggagtccaagggcccaagggccagaagggggagccgtacataatagcaccggagatc
atcagccgatacaggggagatcctggggattcagggttcattggttttccaggacctcca
ggtacgctgggtattcaaggacctgttggtccaagaggacagcaaggaagaccaggacca
ccaggacccccagggccccaaggaccacaaggcagcaggggccttggcttctatggagaa
aaaggtgaacagggctccccaggtcctccaggtccacctgggcttcctacaagagaactg
acgggtgtcccccctgacaaacacaagggtgaaagaggagaccctgggccaagaggggaa
gctggaattccaggtgtacttctctttgctcctgaaaaaggtgaagaaggggtaatgggc
tacccgggacaaaggggactgcctggcatcagtggttttccaggactcagtggagaaaga
ggtgttccaggatttgatggtccacctggtggctatggttccagaggaagcaagggagag
cctggcgagatgggtcctccagggccagattcctattttccttcccgcatcccaaggaaa
ggtgcaagaggtgatccaggcttcccaggtgtttctggactcccaggagaccgaggagag
gagggagatcgtgggtcgcctggtcttcctggattttctgatgcggatggggataagcca
ggcttacctggagaaatgggaccaaaaggtgaaaagggtgaaataggagctcctgcttat
tacacgggtccacctgggcttccgggtaaggacggctcaccaggacttcgtggtccacct
ggtcccattggagcccctggtcgtctctttggatttaaaggacgggagggaacaccaggc
agatttggtatacaaggtttccctgggccaagaggacaaaaaggacctaaaggtgaagaa
ggggattgcactagatgccttttgggtgaggaactcagaaggggctctactggcccccgc
ggccctcctggctttccaggaacccctggccagcctggaaggaaaggagaacctggtgat
caaggaccacatggtcttcctggctaccctggtgcaaaaggattttcgggtccagctgga
tttcctggacagaaaggagaaaagggagactctttacacataactacgaaaggtaccaaa
ggaatccgaggagatcctgggctgcctggaatcagaggtgaagatggtttcccaggcaga
gatggattagatggtttaccaggacagcctggccttccaggtgatgctatcagaggtttc
cccggtgatcctggttatccaggtgaattaggcccaaagggctttccaggagaagcaggc
ctgccaggtgaaggatttcctggtccaaaagggttccagggtcctccaggtgaacaagga
caagatggaatcccgggaccaccaggtctgcctggtctgccaggagagcctggccaacta
gactgtgggcaggtcattgaagactttcctagaggagatggaagtgagccaatatggtcg
ggtgcaggctgtgtaaggccaccaaagggatcccaaggcaagccaggactgccaggagcc
acaggtgcaaaaggtgcaagaggattcccaggtgatccaggtccaatgggcttcccaggg
ctaaatggtacacgaggtgatccaggtcgggaaggattcccaggtcctccaggttttact
ggacccagaggagacagaggcccaaatggtctacccggactgcaggggcacccaggcctt
acagggaaatccggagctccaggagcaccaggaccgaagggccttcctggtgacgtgttt
ggagcagcagcaggttcccgaggggatgttggcctccccggcttcccagggctgaaaggt
gcaccaggagatcaaggcataccaggaactagaggagcggatggtagcccaggtttgcca
ggacccaaaggagatccagggccacaaggtctccctggtttgatgggattaccaggaaca
ccaggaacacatggattcccaggtccgccaggaaaccgtgggccagatggtgggcctggc
tctcaaggacctcttggtccacctggtgctaggggagaagatggtgagcaaggttttcct
ggccctgtgggcctgaagggtctgtctggtgacaaaggtgacatgggtctcacaggatta
ccaggtatacgtggcgtgactggtccccctggcataagtggaatggatggctttccagga
gataaaggctcaaaaggttcatctggcattgatggtttcaaaggcatgacaggcctaaaa
ggaagaccaggcatcaagggaatcaaaggagaatttggcccagtcggggctcggggagat
aaaggctcacagggtgcccatggcttcaaaggtgaccgtggggatcaaggtcccccagga
gaacctccaaagctcatgcccagcatgatgatggaagtcaaaggtgaaaaaggagatgtt
ggagaaaggggcacgaagggattctttggcttaaaaggtagcaagggaatgccaggcctt
cctggaaagacaggaaccccagggtctcctgggcatcccagctacgtggctggtgtgaaa
ggagacattggcgcaaaagggctaacgggtctgaaaggctatcctggtcctgctggctct
cctggcatcagaggcttccctggcaccacaggagtccgaggagaaaaaggcattccagga
atttcaggccattttggtactcctggctcgcatggagaaataggtgatcggggagatact
gtaaacttaccaggaatgccaggacttaaaggggaagttggtgtgccaggcttaacaggc
ataagaggaggtgtggggccaaaaggagaaggtggtgatcctggtttccctggcattgaa
ggcctcaagggcacgcagggtgtccctggctctgtgggaccggaaggtttgccaggactg
gttggccccccagggcagcaaggaagccccgggacacctggatttccaggtgaaaaggga
actcccggctggcctggcttaccaggacaagcaggccagcctggcttaagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatgggtat
ggctctgcaggtttcccaggcacagtgggtgacaaaggagaagcaggagagccaagcaga
gtagaaggtggccgaggacctccaggccagaagggagacagaggtgttccaggagtccca
ggaccctttggtattcctgggcaggaaggatttccagggcctcctgggatttcaaatata
tcaggatatcctggtgataaaggttccccaggtctagatggagtcccaggctatccagga
ccacaggggcagcctggaatacctgctccaccaggaagcaaaggagaaagtggacaaaca
ggtaggactggagaaattggcccaaaaggaagtagaggtgatcctggatcagcaggaaga
cctggcctgcctggattccctggactaaaaggtcgtaagggtgaacaaggtgtcatcggc
tttatgggcacagcaggatttccaggtgatttgggacctattggacccaagggagataga
ggagtaactggcttccagggacctccaggctctcctgggctgccccctcttcctccaagg
ctggttgctgagcaaggttcaccaggtcctcgtggaaatataggacctcagggaagccca
ggagatatgggacctcagggcccaccaggagatccaggtttcagaggctcacctggagag
ccaggactccagggcaggggtggcattccagctcctcctggctccagaggggaacaagga
ggaatgggatttcagggtccggtgggatttgaaggtcagccaggtcgccccggtagccct
gggccaccaggcatgccgggacgcagtgtcagcatgggctacctgctggtgaagcacagc
cagtctgaccaagagccaatgtgcccagttggcatgaacaaactctggagtggatacagc
ctactgtattttgaaggacaagagaaagcacacaaccaggatctagggctggctggttca
tgtttgtctcgttttagcaccatgccattcctctactgtaaccctggggatatttgttat
tatgcaagccgaaacgataaatcctactggctctcaactacagcacctcttccaatgatg
cccgtggcagaagaagacattaagccgtatatcagtcgctgctcagtttgtgaggcccca
gctgtggcaattgctgtccacagccaagaagcttctattcctcactgccctgaaggctgg
cgcagtttgtggattggatattccttccttatgcacactgctgctggtgatgaaggtgga
ggacagtcgctggtttctcctgggagctgcctggaagatttcagggcgactcctttcatc
gaatgcaatggcgcacgcggaacctgtcactactttgcaaacaaatacagcttctggctc
accacgatcgaccaacccttccaaagcaagccctcgggagacacactcaaggcaggactc
attcgaagccatatcagcagatgtcaagtctgtatgaaaaacttatag
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integrated database retrieval system
