KEGG   Aphelocoma coerulescens (scrub jay): 138104786
Entry
138104786         CDS       T10543                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
acoe  Aphelocoma coerulescens (scrub jay)
Pathway
acoe04382  Cornified envelope formation
acoe04510  Focal adhesion
acoe04512  ECM-receptor interaction
acoe04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:acoe00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    138104786 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    138104786 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    138104786 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    138104786 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:acoe04147]
    138104786 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:acoe00536]
    138104786 (COL4A1)
Exosome [BR:acoe04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   138104786 (COL4A1)
Glycosaminoglycan binding proteins [BR:acoe00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   138104786 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 138104786
NCBI-ProteinID: XP_068860087
LinkDB
Position
1:complement(24827260..24946852)
AA seq 1669 aa
MWLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGPVHPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPQGPPGEPGPPGAPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEQGVPGLPGSGFKGDKGEPGKPGPRGKPGKDGEPGLKGEPGL
PGGFGIPGRPGEPGSKGDKGERGYPGPPGRVIDAGPVDTFGEKGDPGVSGLPGLKGQKGE
KGFPGAQGIPGPPGRPIPDRVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGVPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVGPPGLPG
PQGPPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGAPGLTGSPGAKGEPGDFTYDSILK
GEKGDPGFPGQPGIPGREGRPGKDGFPGPQGPKGAAGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGTAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLDMPG
PKGEKGSQGQPGVPGSVGLPGLPGPQGAVGLKGSAGPKGEMGVMGAPGLPGIPGPAGDRG
LPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQGEKGDHG
ATGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGL
PGPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGNQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
LKGAKGEQGSSGWPGSPGGPGMKGDPGFQGLPGSPGLPGDVGPKGDLGPPGVPGIPGPKG
TPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGQPGQKGEVGPYGPPGPRGFPGPPGPDGLPGAMGPPGAP
SVAHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgtggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttccggttgtggaaaatgtgattgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtataggacctcca
ggacctcctggcatgaagggagatccaggtgaagtgatcggtcctgtacatcctggtgtg
ctaaaaggtgaaaaagggtttcctggtcaacctggactgcctggtccacccggagcttca
ggctttcaggggccaatggggccacaaggtcctccaggagagccaggtcccccaggggca
ccaggacttccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggggtaaggggccccccaggacccccaggaccagcaccccatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggtgaaaagggtgaacag
ggagtcccaggattgcctggttcaggtttcaaaggagacaagggtgaacctgggaagcct
ggtcctcgtggaaagcctggaaaagatggtgaaccaggactgaaaggagaacctggtttg
cctggagggtttgggattccaggacgacctggggagcctggctcaaagggtgacaaaggg
gaacgaggctacccaggacctccaggaagagtgatagatgctggaccagtagataccttt
ggtgaaaaaggagaccctggagtttcaggtttgcctggactgaaaggtcaaaaaggtgaa
aaagggttccctggtgcacaaggaatcccaggacctccaggtcgaccaattccagacagg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccagga
tttccttcacctggaatccctggaagagatggtgtcccaggtccccctgggttgcctggc
ccaccaggacctccaggcaaaacagatggaattgatcagtgccagcagggagaacctggt
gcaccaggtagtcctggacttccaggaagagatggatttccaggagagatgggagagaaa
ggggacaaaggtgaagcctgtgccttgtgtgataaagtaggacctcctggacttccagga
ccacaagggccaccaggtccagcaggtttcccaggacaagcgggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtacctggcccccccggtgctccaggactt
acgggcagccctggggcaaaaggagaacctggagattttacttacgattctatcttgaaa
ggggaaaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaaga
ccaggaaaagatggatttccaggtccccagggtccaaaaggagcagcgggtacagctggc
ttgaaaggagaacgtggtccccctggccagcctggattccctggagtgcgtggtgaaaga
ggttttcctggcccacctgggataggtactgcaggattacctggtgaaaaaggagacaga
ggctttgctggaaccccaggtttaccaggacttccaggagcaaagggtgaagcaggacga
actatatctctccctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggtagacctggcctaccaggagaa
aaaggtgctgttgggcagccaggtataggcttccctggacctcccggtcccaaaggtttc
caaggtcagcctggctcacctggtctgccaggaactccaggaacccctggtctggatggt
ttgccaggagttccaggtttacaaggccaaaagggtgaacctggtgtaggtctccctggc
cctaagggattgccaggaccccccggcccagctggcatccctggagaaaagggaaatcca
ggactgcctggcttacgtggtgagcaaggctttccgggcatacctggacagcaaggattc
agaggtgaccccggtctcccaggtctccaaggcttgcagggccctccaggcgcaccgggg
ttgggccctccaggattgccaggacctgctgggcagccaggaccccagggaccaccaggg
tttcctggagtaaaaggagaaaggggcttccctggtgtcccaggtctagatatgccagga
ccgaaaggggaaaaaggtagccagggccagccaggagtcccgggctctgtggggttacct
ggcctgccaggtccacagggggctgttggactgaaaggatcagcaggacccaaaggagaa
atgggagttatgggagctcctggattgccaggaattcctggaccagctggagatcgaggg
ttacctggtgaaaaaggtagccagggtttcaaaggtgtaattggaccacagggtgatcct
ggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacaac
atggacatggttagcctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaagggctacgtggggattatggagaaccaggaattccagggagggat
ggtgaacctggtactccaggacaaccaggaccaaaaggtgatcagggccccccaggatac
ccaggggatccaggagttccaggacaaaaaggatcagttggtgaaatgggtttgccagga
acacctggagaaaagggtcttcctggagtaccaggttcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
gggtctcctggtgagaagggagaaccaggaagaacgggtagtccgggtttatctggagat
aagggtgaaaagggtagtgcaggaattcctggaatgccgggtgccccaggtcccaaggga
tcccctggcatggcaggatttccaggaagtcccggccgccatggagagaagggtgaaaaa
ggacttccaggcttaagtgggattccaggtttaaaaggagaaccaggtgaacctggtctt
ccgggtcctgctggtgctattggtcagaagggtgaaccaggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtcttccaggtagaggacttccagggtttcctggt
gcaaagggagataaaggtgcaaaaggtgaagtgggttttccaggatccccaggaagtcca
gggatcccaggcctgaaaggggaaccaggatatgcaggtccaccaggccctaaggggaac
caaggtcttcctggactcccaggaagtgcaattgaaggccctaaaggagacagaggaccc
caaggccaacctggtcttccaggtttaccaggtccaacagggccaccaggacctccaggt
ctgaaaggggccaaaggagagcaagggagcagtggctggccagggtctcctgggggtccg
ggaatgaaaggtgatccgggtttccaaggactgccaggtagtcctggtttgccaggagat
gttggtccaaagggtgatcttggacctccaggagttccaggtattccaggtccaaaagga
actcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggccccccaggcccaccaggtccttttcagcttgttaaaggggatcctggc
ttacctggccctgtaggaccagttggtctcaagggattcccaggacttccaggtcccaaa
ggacagcaaggagtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggtcagcctgggcagaaaggggaagttggtccttatggtcccccagggcccagagga
ttccctggtccgcctggtcctgatggcttgcccggggctatgggcccaccaggggcacca
tctgttgctcatggcttccttgttaccagacacagtcaaaccactgaagaaccgtcgtgt
ccatttggaacaaggctgatttaccacggctactccttgctctatgtacaaggcaatgaa
agagcacatggccaagatctgggcacagcaggaagctgtcttcgtaaatttagtaccatg
cctttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaatgactactcc
tactggctgtctactcctgaacccatgccaatgaatatggctcctatcactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
catagtcaaacaattcaaataccaccctgtcctgaaggctggagttcactttggattggt
tactcctttgtcatgcacaccagtgctggtgcggagggctctggccaggccctggcgtcc
cctggctcctgcctagaggagttccgcagcgctcccttcattgaatgccacggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaagaaaccgactccctcaactttgaaagcaggggatctacgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa

DBGET integrated database retrieval system