Aphelocoma coerulescens (scrub jay): 138105382
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Entry
138105382 CDS
T10543
Symbol
TGFBRAP1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04148
Efferocytosis
Brite
Membrane trafficking [BR:
acoe04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
138105382 (TGFBRAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
138105382
NCBI-ProteinID:
XP_068861384
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All DBs
Position
1:28980709..29018178
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AA seq
863 aa
AA seq
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MSVKAFKLVSAVEREVLMGDKNYINIECIECCGKNLYIGTNDCFIYHFLLDEKVSTAGKI
TFAATKQLHKYLGLKKPVSELKAASALTRLLVLCDNTITLVNMINLEPVPTGARIKGAVT
FTLNENPVSGDPFCVEVCIISVKRRTIQMFMVFEDRVQIVKEVFTPEQPCAVAVDGYYLC
LALTTQYIILNYNTGVSQDLFPYCSDEKRPIVKRIGRQEFLLAGPGGLGMFATVDGISQR
APVHWSENVIGAALCFPYVVALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGKVIVAT
NKGVYILVPLPLEKQIQDLLASHRVEEALVLAKGARRNIPKEKFQVMYKRILQQAGFIQF
AQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFIRSHPPLHEYADLNQLTQGDQEKM
TKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEANHESLLDLLVSENFCLLTDSAA
WLEKHKKYFALGLLYHYNGQDAAALQLWVKIVDGDIQDSTRSDLYEYIVDFLTFCSDQDL
VWKYSEWILQKNEEVGVQIFTKRPLEEQEKNNINPDDIVSCLNKYPKARVKYLEHLVLER
KIEKEKYHTHLAVLYLEAILQLKSVTTDNCTETTELLLKLRSLLQKSDLYRIRFILEKIQ
GTDLHMESAILYGKLEEHEKALHILVHELKDFRAAEEYCIWNSEKRDVQYRQRLFHMLLS
VYLTPGTSDCALVMAAVDLLNNHAAEFDAGLVLQVVPDSWSVQLLSTFLAGAVRQSIHTK
RMTQVALGLAQAENLVYKHEKVKQKGSPILLSDKKVCQVCQNPFCEPVFVRYPNGSMAHT
HCAANRHLNSNVTHHSPSSSNQT
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttaaagctttcaagctcgtttctgctgttgagcgggaggtgttaatgggagac
aaaaattacatcaacatcgagtgcattgagtgctgtgggaaaaacctctatattggaacc
aatgactgctttatctatcactttctgttggatgaaaaggtatcgacagctggaaaaata
acttttgctgccaccaagcaactacacaaatacctgggcttgaagaagcctgtgagcgag
ttgaaagcagcctctgccctcaccagactgcttgtgctttgtgacaacacgataacacta
gtgaacatgatcaacttggaacctgtccccactggtgctaggatcaaaggagctgtgacg
ttcacactgaatgaaaaccctgtgagtggggatcctttctgcgttgaagtttgcattatc
tcggtcaaacgtcggaccattcaaatgttcatggtgtttgaagacagagtccagatagtg
aaggaagtgtttactccagaacaaccctgtgctgtggctgtagatggttactacttatgc
cttgcccttactacacaatatataattttgaattataatactggtgtctcccaggaccta
tttccatattgcagtgacgagaaacggccaattgtgaaaaggataggcagacaagagttt
ctgttggctggccccggaggcctaggcatgtttgctactgtagatgggatttcgcagcgc
gccccggtgcactggtcagagaatgtgattggggcagctttgtgctttccttacgtggtt
gctctcgatgatgagttcattacggtgcacagcatgctggaccagcagcaaaagcaaacc
ctgccttttaaagaaggtcacattctacaggactttgaaggaaaggtgattgttgctact
aacaagggtgtgtatatcttggttccactacctttggaaaaacagattcaggatcttcta
gctagccacagagtggaagaagcccttgttctagcaaaaggagctcgaaggaatattcca
aaagagaaatttcaggtaatgtacaagcgaatcctgcagcaagcaggttttatacagttt
gcacagcttcagttccttgaagcaaaagaactcttcagaagcggccagcttgacgtccgg
gagctgatctctctctaccccttcctgttgcctacttcctcttcatttatccggtctcat
ccccctctgcatgagtacgcggacctgaaccagctgacccaaggggaccaggagaagatg
acaaaatgcaaacgattcctcatgagttatttgaatgaagtccgcagcactgaggttgca
aatggctacaaggaggatatcgacacagctttactcaagctgtatgcagaggcaaatcat
gaaagcctgctggatctcctagtttcagagaacttctgtcttctaacagatagtgctgct
tggctggaaaaacacaaaaagtattttgcacttggtctcctgtatcactacaatggtcag
gatgctgcagcactgcagttatgggtgaaaatagtcgatggagatattcaagattctaca
cgttcagatctctatgagtacatagtagacttccttacattctgctcagaccaggaccta
gtgtggaagtactctgaatggattctacaaaaaaatgaagaggttggtgtacagattttc
actaaaagacctttggaagaacaggagaaaaacaacattaatccagatgatatagtcagt
tgccttaacaaatatcctaaagcacgtgtcaaatatctagaacatctagtactggaaaga
aaaatagagaaagaaaagtaccatactcatctagctgtcttgtacttggaggcaatactt
cagctaaaatctgtgaccacagataattgtacagaaacaactgagctgctgttgaaactt
cgcagtctgcttcagaaatctgatctttatcgaattcgttttattttagaaaaaatccag
ggcacagaccttcacatggaaagtgcaattttatatgggaaattagaagaacatgagaag
gctttgcatatccttgtccatgagttgaaggacttccgtgctgctgaagaatactgtata
tggaactctgagaagagagatgtgcagtacagacagaggcttttccatatgctgctgtca
gtgtatttaactccaggcacttcagattgtgcactcgtcatggctgctgtggatctcttg
aacaaccatgctgcagaatttgatgcaggtctagttttgcaggtggtgcctgacagctgg
tcagtgcagctcctctccaccttcctggctggagcagtgagacaaagcattcacacaaaa
agaatgactcaggtggcacttgggttagcacaagctgaaaacttagtctacaagcacgag
aaggttaaacaaaaaggatccccgattcttctttcagacaagaaggtgtgtcaggtgtgc
caaaatcctttctgcgagcccgtgtttgtaagatacccgaatgggagcatggcccacaca
cactgtgctgcaaacagacatctcaattccaatgtgactcatcactctcccagctccagc
aatcagacttga
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