Aphelocoma coerulescens (scrub jay): 138106604
Help
Entry
138106604 CDS
T10543
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138106604 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acoe03032
]
138106604 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138106604 (TOPBP1)
DNA replication proteins [BR:
acoe03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
138106604 (TOPBP1)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
138106604 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
138106604
NCBI-ProteinID:
XP_068863574
LinkDB
All DBs
Position
2:complement(53135296..53160242)
Genome browser
AA seq
1517 aa
AA seq
DB search
MRSSKEPFFVKFIKSSGSSEYFSKALESIKEFQSEEHLQILEEETVLNIKENDKSLYICD
PFQGVGFSHLKKLGCRIVGPQVVLYCMQSQQCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGCVYRDLNMSVTHLIAGEVGSKKYLVAASLKKPVLLPSWVKTLWDKSQQ
RIMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIKKGFCQDETMYKVEAGSKLHNAPSTSTPTND
TSKPHNHTLSDVSHISSINLSGVNETACNSAMSSRLDPLPDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENNDELKHFLDKTAHRPHI
VTAKWLLESFGKGCLCPVEHYIPLNYQLLENPILEQPGMKSIFPKKTSHLKKDAVNMVKH
QRAAEDDFLSQYVNNYPTLDEVEKLTSRTFSDVTNLTAQGENQPSVCNGSLAESSALAEG
GLFFRKRFLLLGFGEEDESCIADIIKDNAGEVLPLQSRTIADYAVVPLLGCTVKATVGDV
VTNTWLITCVEQQVLLDIRSNPLFTPVLVMEGATPLEDCVLSFSQFIGAERDSLVYLAGV
LGARVQEFFVRKASAKKGMFASTHLVVREPNGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENAEAEESCITQLSKTPATVKSPDSEQPTHLLEAGKKGAVTPLDINRFQSKA
FQAVISHHTGKTTPVAQGGPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALEALETPRG
PEQKTRKLSTPLSEVIGRNLKLALASSTAQAAALTASPQLAAAQPEVEEEPKPLADAVIY
VSKKLSKRQRELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIVSE
HWLLESAREYKRLPESLFPHTYNPKMSLDISAVQDTRLSSSSKPLSAGKPAEENEIIPVD
EDDADDDVTTDQIKEMVTIGEEQVVASESKGVLTQALEMREDFQRQLQELMSATSLVKPQ
GQRGSLSRSSFDGSPATPDSTRSVRNGRSRVLEALRQSRQALADINTEPSQSEQIIWDDP
TAREERARLVSNLQWPNSPSQYLEQGQSNTNKNMDESALKGSVPDAEMTGIAVREAGDGD
VIEGLKNPICRSPETPIKDNLIPTPQAPSIAFPLANPPVAPEPKEKVVTEDKKADEETEK
LRKFQLSSLNPQERFDYCHLIEELGGIVLEKQYFDPDCTHIVVGHPLRNEKFLASMAAGK
WVLHRSYLEACRGAGCFVQEEDYEWGSNSVLNVLSGINVNQKKLALAAMRWRKRIQKGSQ
ETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSVSLFKEATHLFADFSKLK
PDDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPTESYRLPEAESYLQNNSDLGSGLSQ
KRKAGGEMSRVKRSRIH
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtagtaaggagccgttttttgtgaagttcataaagtcttccgggagctcggaa
tatttttctaaagcccttgagtctataaaagaattccagtcagaagaacatcttcagatc
cttgaagaagaaacagtactcaatataaaagaaaatgataaatcactttacatttgtgat
cctttccaaggcgtgggtttcagtcacctcaaaaagcttggctgtaggattgttggacca
caggtagtcctgtactgcatgcagtcgcagcagtgtgtcccgagagctgagtatcctgtg
tacaacatgaccatggccgacgtcacggtgtcctgtaccagcctggagaaggatgtgagg
gaagaagttcacaagtatgtgcaaatgatgggtggatgtgtatacagagacctcaacatg
tcagtgactcatctgatagctggagaagttggaagcaagaaatacttggtagctgcttcc
ctgaagaaacctgttttgcttccctcttgggttaagacattgtgggataagtctcagcaa
cgcataatgaggtacactgatgttaacatggaggactacgcttgtcctgtgttcctcggc
tgcacaatctgtgtaactggcttaagcagctctgacaggaaagaagtccagcgcctcact
gctgagcatggtgggcagtacacggggcagctcaagatgaatgaatgcactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaatgtgcactgtgtg
tctgtgcagtggttttctgacagcatcaagaaaggcttctgtcaggatgagacaatgtat
aaagtagaggctggatcaaaactgcataatgcacccagtacatcaacacctacaaatgac
accagcaagcctcataatcataccctttcggatgtcagccacatttccagtatcaattta
agcggtgttaatgaaactgcatgtaattcagctatgagcagcagactggatcctcttcct
gatgagctggaaaacttggacataagttcttttcaagcccctgaagatttgttagatggg
tgtcgaatctatctctgtggcttcagtggcaggaagttggacaagatgagaaggcttatt
aattgcggtggtggtgttcgatttaatcaacttaatgaagatgttactcatgtcattctg
ggggaaaataatgatgagctgaaacactttttggacaaaacggctcacaggcctcatata
gtgacagcaaaatggttgctggagtcatttggtaaaggttgtctctgtccagtggagcac
tatatccctctaaactaccagctgttagagaatccaattttggaacaacctggaatgaag
tcaatttttccaaaaaaaaccagtcacttgaagaaagatgctgtgaacatggtaaagcac
cagagagctgctgaagatgacttcctctctcaatatgtaaataactatcctacactagat
gaagttgaaaaactaacatccagaaccttcagtgatgttactaacttgactgctcaagga
gagaatcagccttctgtctgtaatgggtctttggcagagtcttctgcactggctgaagga
ggcttatttttcagaaagagatttcttcttctgggttttggtgaagaggacgagtcctgc
attgcggatattataaaggacaatgctggggaagttctgccactgcaaagcagaaccatt
gcagactatgctgtggtacctttattagggtgcacagtgaaggcaactgttggtgacgtt
gtcacaaatacatggctgataacatgcgtggaacagcaagtccttctagacatccgatcc
aatcctctcttcacaccagtcctggtaatggaaggagctactcctctggaagattgtgtt
ctttcttttagccagttcatcggtgccgagagagactcccttgtttatctggcaggagtg
ctgggagccagagtccaggaattctttgtgcggaaagccagtgcgaaaaaaggaatgttt
gccagcacccatcttgtggtgagagaaccgaacggctccaagtatgaagctgcaaagaag
tggaatttgccagcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagaga
gcagatgaaagcaagttcttggttgaaaatgcagaggctgaagagagttgcattacccag
cttagcaaaacaccagcaactgttaaatctcctgattcagaacagcctactcatctcctt
gaagctggaaaaaaaggagctgtgaccccccttgatatcaacaggttccagagtaaagct
ttccaagctgtaatctctcatcatactgggaagacaacccctgttgcacaagggggacca
ctccagaaagagccgtctttacatcttgacacaccatcaaagtttctttccaaagacaag
ttgttcaagccttcttttgatgtaaaggatgctctggaagctttggaaactcctagaggt
cctgaacaaaaaaccaggaaactgagtacacctctctctgaagtcatcggcagaaacttg
aaactggcactggcaagcagcacagcgcaggcagcagctcttactgccagccctcagttg
gctgctgcacagccagaagtggaagaagagcccaagcctctagctgatgctgttatatat
gttagtaaaaaacttagtaagaggcaaagggagctgaatgcagtagcagcttctcttgga
gcagactacagatggtgctttgatgaaacagtaacacacttcatctataaaggaggacag
aatgataacaataaagagtacaaatctgttaaagaacggggtatacatattgtttcagaa
cactggcttttagagagtgcccgagaatataaacggcttcctgaatctctctttcctcac
acttacaatcccaaaatgagcttggacatcagtgcagtgcaagacaccaggctctcctcc
tccagtaaacctctttcagctggaaaaccagccgaggaaaatgagattattccagtggat
gaagatgatgctgatgatgatgtaactactgaccaaataaaggaaatggtcactataggg
gaagaacaagttgtagcaagcgaatccaaaggagttttaacccaagcactagaaatgagg
gaggacttccaaaggcagctgcaggagctcatgtctgccacatcactagtgaaaccacaa
gggcaaagaggatccctttccaggagcagctttgatggctctccagccactcctgatagc
acacggtctgtgcgaaatggccgcagcagggtcttggaagctctaaggcaatcccgccag
gcactggcagatataaacacagagccatcccagagtgagcagatcatttgggatgatcct
actgcaagggaagagagagcaagacttgtcagcaaccttcagtggcctaatagtccttct
cagtaccttgagcaaggtcagagtaacaccaataagaacatggatgagtctgccctcaaa
ggatctgtaccggatgcagagatgactggtatagctgttcgtgaggctggggatggagat
gtgattgaaggtctaaagaatcccatatgtagatcccctgaaacaccaattaaagataac
ttgatccccactccacaggcccccagcattgctttccccctggctaaccctcctgtggca
ccagagcccaaagaaaaggttgttacagaagataagaaggctgatgaagaaacagaaaaa
ctccgtaaatttcagctgtcttctcttaatcctcaagaaagatttgattactgccacctg
attgaggaattaggtggaatagtacttgagaaacagtactttgatccggattgcacacac
attgttgtgggacatcctcttcggaatgaaaaattcttggcctcgatggcagctggaaag
tgggtgcttcatcgttcctacctggaggcatgtagaggagctggctgctttgttcaggaa
gaagactatgagtggggaagtaactctgtacttaatgttttgtctggaatcaatgtaaac
cagaagaaactagcactggcagccatgaggtggaggaaaagaattcaaaaagggagtcaa
gaaactggtattgttgagggagctttcagtggttggaaagtaatcctgaatgttgatcaa
accaaggaagcgggattcaggcgccttcttcagtcaggaggagcaaaagtgttttctggc
cattctgtgtctctctttaaagaagcaactcacctctttgctgacttcagtaagctgaag
ccagacgactccagggttaacgtggcagaggcggcagcccagggagtgaactgcctcaaa
ccggagtacatcgctgactacctcatccaggatccacctccccctacggagtcttaccgc
ctgccggaagccgaatcttaccttcagaataactcagatctcggaagtggattatcccag
aaaagaaaagcagggggagaaatgagcagagtcaagcgatccagaatacactaa
DBGET
integrated database retrieval system
