Aphelocoma coerulescens (scrub jay): 138107367
Help
Entry
138107367 CDS
T10543
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04510
Focal adhesion
acoe04512
ECM-receptor interaction
acoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138107367 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138107367 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138107367 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
acoe00535
]
138107367 (COL9A1)
Proteoglycans [BR:
acoe00535
]
Extracellular matrix (ECM) proteoglycans
Others
138107367 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
138107367
NCBI-ProteinID:
XP_068864717
LinkDB
All DBs
Position
3:95614249..95680951
Genome browser
AA seq
919 aa
AA seq
DB search
MKSHWKITAFFYLCSFLWSFISATIQHQSRLPVILGASHRTDICPTIRIGQDDLPGFDLI
SQFQIEKAASQGIIERVVGSTSLQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGQVKSVEFSYKGADGRHQTASFLHLPFLFDSQW
HKLMIIVEANSVTLFIDCIKIESLNIKPKGKINTDGFALLGKLKNNPQISVPFEIQWMVI
HCDPLRPQREGCGELPARITQTGIERGPPGPPGPPGPPGPPGVPGIDGIDGERGPKGPPG
PPGPDGDAGKPGSPGLPGEPGADGFTGPDGSRGAPGPKGQKGEPGLPGARGLPGKGLLGP
PGPAGAAGLPGEVGRAGPPGDPGKRGPPGLPGPPGPPGTIGLQDGDLLCPSACPPGRPGH
AGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPSGEVGAQGPPGILGIRGITGIMGPKGT
KGARGLDGDPGPQGLPGAPGDQGQRGPLGETGPKGERGPQGTRGINGLPGPKGEPGLPGV
DGREGIPGMPGAKGEPGKPGAPGDTGLQGLPGLPGSPGMKGIPGPKGNRGPPGVPGLMGN
PGKQGQQGPEGEAGPTGPRGPPGSRGETGPAGPPGLPGKLGPQGNIGLPGLPGPPGLPGG
KGDRGSVGEPGPKGEQGAPGAEGDGGEKGDLGDMGLPGAKGAIGNPGDPGSRGPEGSRGL
PGMEGPRGSPGPRGLQGEQGAPGLPGSEGPAGKEPSDHHIKQVCMRVMQEQLAQLAASLR
RPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEPGERGE
RGLPGRGLKGYPGPRGLPGEPGKASYGREGRDGDRGPPGVAGQPGVPGPPGPPGPPGYCE
PASCRMQAGQRAGKNMKGP
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccactggaaaattaccgctttcttttacctgtgtagttttctgtggtctttc
atctcagccaccatccagcaccaatcaagactaccagttattctgggtgccagtcacaga
actgatatctgcccaacaatcaggattggtcaagatgacttaccaggctttgacctgatt
tctcagttccaaatagaaaaagctgcttcccaaggaattatcgaaagagtagtgggatcc
acttctctacaagtggcttataaattgggacccaatgtagacttcaggataccaaccagt
gccatatattccaatggattgcctgatgaatattcctttctaactacttttcggatgact
ggggccacacttcagaaatattggactatttggcagattcaggattcttcaggaaaagaa
caagttggagtgaatctcaatggtcaagtgaaaagtgttgagttttcttataaaggagca
gatggaagacaccaaacagcatcatttttgcatctgcctttcttgtttgactcccaatgg
cacaagcttatgataatcgtggaagcaaacagtgtcacactttttattgactgtattaaa
atagaatccttaaacataaaaccaaaagggaaaatcaacactgatggctttgctctgctt
ggaaaacttaaaaataatcctcaaatttcagttccgttcgagatccagtggatggtgatt
cactgcgaccccctgcgaccccagcgcgaaggctgcggcgagctgcctgctcggataacc
cagacgggaatcgagagaggtccccctggtccaccaggccccccaggtccaccagggcca
ccaggagttcccggtattgatggcattgatggggagagaggcccaaagggcccccctggt
ccaccgggtccagatggggatgcaggcaaaccaggatcccctgggctgcctggagagccg
ggagctgatggattcactggacctgatggctcacgtggagccccaggaccaaaaggacag
aagggggaaccaggacttccaggtgctcgtggacttccaggcaaggggcttcttggacca
cctggtccagctggtgcagcaggacttcccggggaagtaggtcgtgctggtccacctgga
gatccaggaaaaagagggccaccagggctaccaggacctccaggtcctccaggaactatc
ggcctgcaagatggcgacctgttgtgtcccagtgcttgtccacctggccgtccaggacat
gctggcttaatgggtatgaaggggcaaaaaggttcaaaaggagagtctggtgaaccagga
aaacaaggttataagggtgaagaaggggaccaaggacccagtggtgaagtgggagctcaa
ggccctccaggcattctaggtatcagaggtataactggcataatgggacctaaaggtacc
aaaggagctcgtggtcttgatggtgatcctggtccccaaggtcttcctggtgcacctggg
gatcaaggacagagaggtccactaggagagacaggtccaaagggagaaaggggtcctcaa
ggtacaagaggaataaatggcctccctgggcctaaaggagagcctggcttaccaggagtt
gatggccgtgaagggatccctggaatgcctggagctaaaggtgaaccaggaaaacctgga
gctccaggtgatacagggctccaaggattgccaggtttaccaggctctccaggtatgaaa
ggtattcccggcccaaagggtaatagaggtcctcctggggtgccagggttaatgggaaat
cctggtaaacagggtcaacaggggccagagggagaagcaggtccaacaggaccccgggga
ccaccaggtagcagaggggagacaggtcctgcaggtcctccaggtttaccagggaaattg
ggtccccagggtaatattggacttcctggactgcctggtcctccaggccttcctggtggt
aaaggtgaccggggttcggtgggtgaaccaggacctaagggtgaacaaggtgcacctgga
gcagaaggagatggaggagaaaagggtgacttaggcgacatgggattaccaggagcaaag
ggagctattggtaatcctggagaccctggttcccgtgggcctgagggaagtcggggactg
ccgggcatggaagggccacgaggctcacctggaccacgaggattgcagggggaacagggt
gccccaggcctgcctggcagcgaagggccagctggcaaagaaccaagtgatcaccacatt
aagcaggtttgcatgagagtcatgcaagaacaattagctcagctggcagccagccttagg
aggccagaattcggtgctccaggtcttcctggccgaccagggccaccaggtgctccagga
cctgctggtgaaaatggtttcccaggacagcttggcccccgtggcctgcctggccttaaa
ggtccccctggtgagattggtcgcaaaggtcctaaaggtgaaccaggagaaagaggagag
agaggattgccaggcagaggactgaaaggttatcctggaccaagaggtcttccaggtgaa
ccaggcaaagccagctacggcagggaaggccgtgacggcgaccgaggtccccctggggtg
gccgggcagcctggggttcctggtccccccggccctcctggccctcccgggtactgcgag
ccagcgtcctgcaggatgcaggcgggacagagagcaggaaagaacatgaaagggccctga
DBGET
integrated database retrieval system
