Aphelocoma coerulescens (scrub jay): 138107747
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Entry
138107747 CDS
T10543
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
138107747 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138107747 (MSH2)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
138107747 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
138107747
NCBI-ProteinID:
XP_068865444
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All DBs
Position
3:19940662..19987400
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AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQMNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLIDICSDFSKFLEMIETTLDMDKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLTTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSAINDEYIRNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRIVLKGARHPCIEVQDEVAFIPNDISF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIEDFLCQVKALPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggccggggcaccgggaactcagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatccgtcaaagaaaatgactgg
tatttagcctacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgatatgtccacagccattggggttgtgggggttaagctgtctgcagctgatgga
cagagagtagtaggagtgggctatgtcgacactacgctgagaaaattgagtgtttgtgag
ttcccagataatgatcagttctcaaaccttgaagctctactggttcagctgggtccaaag
gagtgtgtgctgccaggaggagaaactgcaggagagatggggaaactgagacaagttatt
cagaggggaggaatcctgattacagacaggaagaaggcagatttcacaaccaaagatatt
gttcaggatctcaatcgcttgttgaagtcaaaaaaagaagagcagatgaatagtgcagca
ctgccagagatggaaaagcaggttgctgtttcgtctttgtcggctgttatcaagtttttg
gagttgctgtcagatgagtctaattttggacaatttgaactgactacttttgatcttagt
caatatatggttctagacaatgcagctgttcaagccctcaacctttttcagagttctgtg
gagaatgcaaatactgcacagtctctagctggtttactgaataaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagaactacgtcagtgccttcaa
gaagatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaagactgctaccgaatgtaccaggctatcaatcaactgcctaatgtt
gtgcaagcactagaaaaacatgaaggagctcaccagatgttgttgttagcggtatttata
acacctcttattgatatctgctctgacttctcaaagtttctggagatgatagagacaaca
ttggacatggataaggtggagaatcacgaatttcttgtcaaggcttcttttgatcctaat
ttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtccttgttaaca
actgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggagacaaattca
cagtttggacatcactttagagtaacttgcaaggaggagaaagctctccgtaacaattcg
aaatatggaatcattgatacacagaagaatggtgtgaaatttactaacagcaaactgagc
gccatcaatgatgaatacataaggaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagcccatacagacaatgaatgat
gtgatagctcagctggatgccattgtcagctttgctcacgtgtcaaacggggccccggtg
ccctacgtccgtcccgtcgttctggagaagggacaaggcaggattgtgctgaagggtgcc
aggcatccctgcatcgaagtgcaggatgaggtggccttcatccccaatgacatttcattt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaacg
tacatccgacagacaggggtgattgttcttatggcccagatcgggtgttttgtgccgtgt
gagtccgcagagataaccattgtggattgtatcctggctcgggtgggagcaggagacagc
cagctgaaaggagtgtccactttcatggctgaaatgctggaaactgcttcaatccttagg
acagcaactgaaaactccctgataatcatcgatgagctgggaagaggaacttctacctat
gatggctttggcttagcgtgggctatctcagaatacattgccagcaaaatctgtgggttt
gccatgtttgctacacacttccatgaactgacagctcttgctgaccaggtgccaacagta
aataacctccatgtcactgctctgaccagcgatgacacactgacgatgctttatcgtgtc
aaggaaggtgtctgtgaccagagttttggaatacatgtagcagagttggcagctttccca
aaacacgtgatagaaagtgcaagagagaaagcattggagctggaggagttccaaaacatt
gggaagtccaaggaatctgaaggagaaccaccagccaagaagttatacagagagagagag
gaaggtgaaaagataattgaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagaagatatcaaagtcaagttgaaacagctgagaaatgatgtgctggcaaag
aacaacagttttgtgaatgaaataatttctcgaacgaaagttacatcatga
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