Aphelocoma coerulescens (scrub jay): 138108244
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Entry
138108244 CDS
T10543
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138108244 (SCAF8)
Spliceosome [BR:
acoe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
138108244 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138108244
NCBI-ProteinID:
XP_068866733
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Position
3:complement(64718799..64822219)
Genome browser
AA seq
1360 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSAAVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFTSLVLPVGTVTSNLATPTLSAGSVFNPLPINKPESDDKGSHLTD
LQISSSENNRSVQSDVSSSSGLVGGVQPPSVSSNSGLSGEGPPPTVSSSSGLAGGVQPPS
VSSNSGLGGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSSSGLVAGVPPPN
VSSSSGLLAGVHPPSVSSSPGLLTGMQPPSVSSSSGVLAGVQPPNVSSNSGLLIMPPPNV
STSSGLMGVPPPNISSNSGLLAMQHPAAVPNMPHLNISNQRMPGMPLIDIRPGLMPHSPG
PRFPLMQPGMPPQRSIPPPAILDPSLHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDNIS
SNPEKRLLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRP
PVDGREHFARPHIDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGG
PKGFHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCR
EINGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQVQ
DDPELYEKLSSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacgcagatcaccaaggcagcaatcaaggctataaagttctac
aagcatgttgtacagagcgttgagaaattcattcaaaagtgcaaaccagagtacaaggtg
cctggtctgtatgtcattgactccattgtgagacagtcccggcatcagtttggacaagaa
aaggatgtatttgcaccaaggttcagcaataacatcatcagcacgttccagaacttgtac
cgttgtcctggtgatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
cccgttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacgccaggt
acacctgtgactccagttaccccagccaatgtggcgcagagtttacctgatccttgggta
tcccagattgctaacacagacacccttgctgctgttgcacagattttacagagtcctcaa
ggccagcagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcactacttcaagccctggatgccggtcttgtcgtccagttacaggccctcacggcacaa
ctcacagctgccgctgctgctgctaacacgcttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggcgaagaatcagaacaaaatgaagagcct
aaaaaggaaactccctcttcccaattgccattagtaccagaatctgtgaacaactcactt
tttcaccaactagctgaacagctacagcaacaaaatttagaacatctcagacaacagctt
ttggagcagcagcagcctcaaaaggcaagccctgaggaaaatcaagaaggaaattttggt
tcagagcactctgcatcaccatcacaagggagcagtcaacagcagtttttagaagtggaa
gctaatgtagatgattcaatggatattcaacaacaggacatggatatagatgaaggtcag
gatattgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccaaggaaacgaaggtctagatcacgg
tctggttctcgtaagcggaaacacagaaagcgttcacgctcaagatcaagagaaaggaag
agaaagtcatctcggtcatactccagtgaaagaagggctcgggaaagggaaaaggaacgc
cagaaaaagggattgcctcctatacggtcaaaaacactaagcgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctacgcagcaggatttaacgaacttgtttgaagaa
tttgggcaaatagagtcaattaatatgatccccccaagaggatgtgcttatgtctgtatg
gtacatagacaagatgcatatcgtgctcttcagaaacttagttctgggtcttataaaatt
ggatctaaaattattaagattgcttgggctttgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctgggagtttcctatattccatgggagaaagtgaaattggat
gatttggagggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagagtgg
gaaacagccagaagctcagaagctgctaaagaaaatactcaaacgacgcagagtgctgca
gttgataagagtaccgttattacaacacagacagaagcttacacacaaccagtcactatg
ctgcagattccagtagctccagctgtgcctgctgttagcttggttccacctgcatttcct
gtcacaatgtctgtccctcctcctggttatagcccaattcctcctccacccttcctgaga
gcaagtttcaacccttcacagccacctccaggttatatgcctcccccagttccacctgtt
gtcccgccacctgttgtcccaccacctgttgtcccaccagttgttccaacacctttggta
cagcctccactaccaattgcacaagagacgatgaaggatgttccttttactagcctcgtt
ctaccagttggcacagttactagcaatctagctactccaactttatctgctggaagtgtt
tttaatcccctgccaatcaacaaaccagaatcagatgacaaaggatcacatcttacagac
cttcagatttcttctagtgaaaacaatagatctgtgcaaagtgatgtatcaagtagctct
ggacttgttggaggagtgcagccacccagtgtctcaagcaattctgggctttctggagaa
gggccaccacccactgtctcaagtagctctggacttgcagggggagtacagccacccagt
gtttcaagcaactctggtcttggaggaggagtgcaaccaccaactgtttccagcaattct
ggtcttgcaggaggaatgcagctacctgctgtttccagtagctcttctcttgctggcggg
attcagccaactaatgcctcaagtagctctggacttgtggctggagtgccaccaccaaat
gtctcaagtagctcagggcttctagctggagtgcatccacccagtgtctcaagcagccct
ggccttctgacaggaatgcagccacccagtgtgtccagcagctcaggagttctggcagga
gttcagccaccaaatgtttcaagcaactctgggcttctcataatgccaccacccaatgtt
tcaactagttctggacttatgggagtgccaccaccaaatatttcaagtaattctggactt
ctggcaatgcagcatccagctgcagttccaaacatgcctcatttaaatatcagtaatcaa
agaatgccaggaatgcctcttatagatatccgtccaggcctaatgccccattcgcctgga
ccaaggtttccattaatgcagccaggaatgccaccacagcgtagtattcctcctcctgca
atccttgatccatctcttcacccaccaccacctcgaggtccttttcctccaggagatatt
tttaatcaaacagaaagaccttttggaacaccaggaagacaaaatatcgataacatttct
tctaatccagagaaaagactactaccacttggaggtgataacattcaacaggagggagac
agagattatcgctttcctccagtggaaaaccgagataatcttaacagaccatctccagtg
gatgtcagagattctgttggacgaccaccagttgatccaagagagggtataggaaggcct
ccagtagatggaagagagcactttgcaagaccacatatagacatgagagaaaattttgga
aggccaggtatagataaccttggccgaagagagcattttggtttcaattcagacaagcac
tggggacagagaggagattatgatgaaagagagcaccatgccttccctatttatggtggc
cctaaaggcttccatgaagacagagagaggtttcggcatgtgaactataggtttgatagt
agaagtggtcccagttggaatagaggatttgaacaagatgctcacagagattttgatgac
cgcagaagaccctgggaaagacagagggatagggatgacagagattttaatttttgcaga
gaaattaatgggaacaggtttggaagagacagaatgtcaaacaactggatcccgcctcca
catccacgggtttttgaatattttgatggggccacttctcaacgcaaagctgataatatg
ccccaggtaaatggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcag
gatgatccagaactttatgaaaaactgtcatcttccgtcgagataaacaaagagaagagt
gacacagaagctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggaca
taa
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