Aphelocoma coerulescens (scrub jay): 138108634
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Entry
138108634 CDS
T10543
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138108634 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138108634 (CPSF3)
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138108634 (CPSF3)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138108634 (CPSF3)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138108634 (CPSF3)
U7-dependent histone pre-mRNA processing factors
138108634 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
138108634
NCBI-ProteinID:
XP_068867667
LinkDB
All DBs
Position
3:110088597..110106548
Genome browser
AA seq
691 aa
AA seq
DB search
MAAKRKAEALIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLCYQLQKL
TGDVEEIEIQQKPALKVFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKI
QKAAVNKISKKIDMDVYRKRMEIMLQDMFGEDCVSSKDDSVLCITVDGKTANISLDTRTV
DCEPGSEDDESLREMVELAAQRLYDALSPVY
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaagcgcaaagccgaggcgctgatcccggccgaggagagcgaccagctgctc
atccggcccctaggtgctggccaagaagtaggaaggtcatgcatcattctggagtttaaa
ggaagaaaaataatgcttgattgtggaatccatcctgggctggaaggaatggatgctctt
ccttatattgatttgatagatccagctgagattgatctcctcctcattagtcatttccat
ttagatcactgtggggctttgccatggtttttacagaaaacaagttttaagggaaggacg
tttatgactcatgccacaaaagctatttacagatggcttctttcagactatgttaaagtc
agtaacatctcagcggatgacatgctgtacacagaaacagacctcgaagaaagcatggac
aagattgagaccatcaacttccatgaagtgaaagaggtggcaggaatcaaattctggtgc
taccacgcaggccatgttctgggagcagccatgtttatgattgaaatagctggtgtgaag
ctgttatatacaggtgatttctcaaggcaggaagacagacatctgatggcagctgagatt
cccaatattaaacctgatattcttataattgaatccacttatggcactcacattcacgag
aagagggaggagcgggaggcgagattctgcaacaccgttcacgacatcgtcaacagaggg
ggccgaggcctcatccctgtgtttgccctgggtcgagctcaagagctgcttctaatctta
gatgaatactggcaaaatcatcctgaactccatgatatccccatatactatgcctcctct
ttggcaaagaagtgtatggcagtttatcagacatatgtcaatgccatgaatgacaaaatc
cgcaagcaaattaacatcaacaatccttttgttttcaagcatatcagtaatctgaagagt
atggatcactttgatgacattggtccgagtgttgtgatggcttccccaggtatgatgcag
agtggcttatccagggagttgtttgagagctggtgcacagataagagaaatggagtcatt
attgcagggtactgcgttgaaggaactcttgctaagcacatcatgtctgaacctgaagag
atcacaactatgtcagggcaaaaactcccactgaagatgtctgtggattacatttctttc
tctgctcacacagattatcaacaaactagtgaatttatccgggccctgaaacctccacat
gtgattttagttcatggtgagcagaatgaaatggccagattgaaagcagcattgatacgg
gagtatgaggataatgatgaagtccatatagaagttcataatcctaggaatactgaagct
gtgacattaaacttcagaggagaaaaacttgccaaggtgatgggatctttagcagataag
aaaccagagcaaggacagagaatttctggaatccttgttaaaagaaattttaactatcac
atcctttctccttgtgacctctccaattacacagacctggcaatgagcacagtgacacag
acacaggccattccctacacgggccctttcaatctgctttgttaccagctacagaaactc
accggtgatgtagaagaaatagaaatccaacaaaaaccagccctgaaggttttcaaaaat
attactgtgatccaggaaccaggcatggtagtccttgagtgggtggcaaatcctgctaat
gatatgtatgcagacactgtgacgacagtgatactggaagttcagtcaaatcccaaaata
cagaaagctgcagtaaataagatttccaaaaaaatagatatggatgtgtataggaagaga
atggagatcatgcttcaggatatgttcggagaggactgtgtgagttccaaagatgactct
gtcctgtgcatcacagtggatggaaagactgccaacatttccctggacactcggacagtt
gactgtgagccaggaagcgaagatgacgaatcccttcgtgaaatggtggaactggctgca
cagaggctttatgatgccctcagcccagtatactga
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