Aphelocoma coerulescens (scrub jay): 138108682
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Entry
138108682 CDS
T10543
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04512
ECM-receptor interaction
acoe04514
Cell adhesion molecule (CAM) interaction
acoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138108682 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
138108682 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138108682 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
acoe04131
]
138108682 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
acoe04090
]
138108682 (SDC1)
00535 Proteoglycans [BR:
acoe00535
]
138108682 (SDC1)
Membrane trafficking [BR:
acoe04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
138108682 (SDC1)
CD molecules [BR:
acoe04090
]
Proteins
138108682 (SDC1)
Proteoglycans [BR:
acoe00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
138108682 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
138108682
NCBI-ProteinID:
XP_068867756
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All DBs
Position
3:complement(115901171..115927210)
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AA seq
309 aa
AA seq
DB search
MINVVAVWLVALCFQAAVPQTTNLNLPPEDLDSSGDEDDVFSGSGAGPLTDQSRAWKIPG
EPTNSSVLAAPVAFSEQPFPGIESRTGKEVISPSATSNLVTEEPVVAVKDEVSILGSPDG
KQTSHVVTTTVRSPTAHFPSVVHVTPSEASAVVHELEPKIPSSDVPVTKDVPEPHSTVPR
EGDIAATPAATAPKDVVPTHEEVSEDGSGDPGDFILTKEEDLVPTQGSEVLADSERNAKA
AGASGIMDRKEVLGGVIAGGLVGLVFAVFLVVFMLYRMKKKDEGSYSLDEPKQSNGGYQK
PHKQEEFYA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgataaacgtggtggccgtgtggctggtggccctttgcttccaggctgctgtcccgcaa
actacaaatctgaaccttccccctgaagaccttgattcatctggtgatgaagacgacgtg
ttctcaggttcaggtgcaggtcccctgactgaccagtctcgtgcctggaaaatcccagga
gaaccaactaattcctcagtactggcagcaccagtggctttcagtgaacagccatttcct
gggattgagagccgaactggaaaggaagtaatatctccttctgcaaccagtaatctagtg
acagaggaaccagttgtagctgtgaaggacgaagtgtccatcttgggctcacctgatggg
aaacaaacaagccatgtggtcacaacaactgtgagaagccccactgctcactttccttct
gtggttcatgtaactccttcagaagcctcagctgtggtccatgagctcgaacctaaaatc
cccagctctgatgtgccagtcaccaaggacgtgcccgagccccactccactgtccctcgt
gagggagacattgctgccacccccgcggcgacagctccaaaggacgtcgttcctacacat
gaggaggtttctgaagatggctctggagatccgggagacttcatcttgactaaagaagag
gatttggtccccacccagggctcagaagtactggctgactctgagaggaatgccaaagca
gcaggagcctcgggaattatggacagaaaagaagttcttggaggtgttattgctggagga
cttgtaggcttggtgtttgcagtgtttctagttgtatttatgctgtacagaatgaagaag
aaagatgaaggcagctattcactggatgaaccaaaacagtctaatggaggataccaaaaa
ccacacaaacaagaggaattctatgcataa
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