Aphelocoma coerulescens (scrub jay): 138108753
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Entry
138108753 CDS
T10543
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe00100
Steroid biosynthesis
acoe01100
Metabolic pathways
Module
acoe_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
138108753 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
acoe01006
]
138108753 (FDFT1)
Enzymes [BR:
acoe01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
138108753 (FDFT1)
Prenyltransferases [BR:
acoe01006
]
Terpene biosynthesis
Squalene/phytoene synthase
138108753 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
HAUS4
Motif
Other DBs
NCBI-GeneID:
138108753
NCBI-ProteinID:
XP_068867930
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All DBs
Position
3:complement(122436402..122447679)
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AA seq
418 aa
AA seq
DB search
MELLRKWLGHPEDIYNLLRFKMGGYRAVMPRMDTDSLGCGLRTCYRYLNQTSRSFAAVIQ
ALDGELRHAVCIFYLVLRALDTVEDDMSIPLDVKVPMLHEFHSYLYQPDWKYMESKEKDR
QVLEDFPTISMEFRNLSKVYQDVISDICHKMGVGMAEFLEKKVDSQHEWDKYCHYVAGLV
GIGLSRLFSASELEDSIVGQDTHLANSMGLFLQKTNIIRDYLEDQMEGREFWPREVWSRY
AKKLSDLAKPENIDVAVQCLNELITNALHHVPDVLTYLSRLRNQSVFNFCAIPQVMAIAT
LAACYNNQQVFRGVVKIRKGQAVTLMMDATNIKAVKAIMYQYVEEIYQKIPSTDPSSNKT
QQVIASIRAASLPGSPVASRHHYSPIYLSCAMLLAALSWQYLSTLSKATEEYVQAGDN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggagctgctgcggaaatggctgggccaccccgaggacatctacaacctgctgcgcttc
aagatgggcggctaccgcgccgtcatgccgcggatggacacggactcgctgggatgcggc
ctccgaacctgctaccggtacctcaaccagaccagccgcagcttcgccgctgtcatccag
gctctggacggagagctgcgacatgcagtctgtatattctacctggttctccgtgccctg
gacactgtagaggatgacatgagcatccccttggatgtcaaggtcccgatgctgcacgag
ttccactcctatctctaccagccagactggaagtacatggagagcaaggagaaggaccgg
caggtgctggaagacttcccaacgatctccatggagttcaggaacctgtccaaggtctac
caggatgtgatttcggatatttgccacaagatgggcgttgggatggcagagttcttggag
aagaaggtggattctcagcatgagtgggataagtattgtcactacgttgctgggctggtg
gggattggcctttcccgtctcttctctgcgtcagagctggaagattccatcgtggggcaa
gacacacatctggcgaactccatgggcctcttcctacagaaaaccaacatcatccgtgac
tatctggaggaccagatggagggaagggagttctggcccagagaggtttggagccgatac
gccaagaagctctcggaccttgccaagccagagaacatcgacgtggccgtgcagtgcctc
aatgaactcatcaccaacgccctccaccacgtccccgacgtcctcacctacctgtcccgc
ctcagaaaccaaagtgtcttcaacttctgtgctatcccccaggtgatggccattgccacg
ctggctgcctgctacaacaaccagcaggtgttcaggggggtggtgaagatccgcaaggga
caggctgtcaccctcatgatggatgccaccaacataaaagctgtcaaagccatcatgtac
cagtacgtggaagagatctaccagaagatcccgagcacggacccctcgtccaacaagacg
cagcaggtcatcgcctccatccgcgccgcgagcctgcccggcagccccgtggcctcccgc
caccactactcccccatctacctgtcctgtgccatgctcctggcggccctgagctggcag
tacctcagcaccctctccaaggccactgaggagtacgtgcaggcaggggacaactga
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