Aphelocoma coerulescens (scrub jay): 138108821
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Entry
138108821 CDS
T10543
Symbol
TRIM54
Name
(RefSeq) LOW QUALITY PROTEIN: tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138108821 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
acoe04121
]
138108821 (TRIM54)
Ubiquitin system [BR:
acoe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
138108821 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
CYP38_PsbQ-like
RHH_9
Sina_RING
vATP-synt_E
Zn_ribbon_FGT1_2
DUF5799
Motif
Other DBs
NCBI-GeneID:
138108821
NCBI-ProteinID:
XP_068868076
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All DBs
Position
3:complement(125895493..125898909)
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AA seq
406 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEVPTCSLCKVFGAHKDCEVAPLPAVYQRQKVGGPRGLGG
PRVPAQPPSRPSPLLXQSELSDGIAMLVAGNDRIQAIITQMEEICHTIEENGRRQKQHVG
LRFDALYGILEERKKELLQSIAAEQEAKLQRVRGLIRQYGDHLEASSKLVESAIHAMEEP
QMAVYLQHSKELLKKITDMSKASMSSRPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLG
EDEGDGPGDGSEAATDEDRLDSLEVPEAAEDVGPRQKPASSPHGQH
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtagggctgaaaccgcttctggcggaggcgcgaagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttctccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtgttccaggcctccaacccg
ttgtggcagtcgcggggctccagcgcggtgccgtcgggcgggcggttccggtgcccgtca
tgccggcacgaggtagtgctggaccggcacggggtgtacggattgcagcggaacctgctc
gtggagaacataatcgacatctacaagcaggagtcggcccgaccccttcatgccaaggct
gagcagcacctcatgtgtgaggagcacgaggatgagcggatcaacatctactgcctgcgc
tgtgaggtgcccacctgctccctctgcaaggtgtttggggcgcacaaggactgcgaggtg
gctccgctgccagccgtctaccagcgccagaaggtagggggcccccggggtcttgggggg
ccgagggtacccgcacagccaccctcacgcccatcccctctactcnnccagagcgagctc
agtgatggcatcgccatgctggtggcggggaacgaccggatccaggccatcatcacacag
atggaggagatctgccacaccatcgaggagaatggtcggcggcagaagcagcacgtgggg
ctgcggtttgacgcgctgtacgggatcctggaggagcggaagaaggaactgctgcagagc
atcgcggccgagcaggaggccaagctgcagcgtgtccgtgggctcatccgccagtatgga
gaccacctggaggcctcctccaaactggtggagtcagccatccatgccatggaggagccc
cagatggccgtgtacctgcagcactccaaggaactcctgaaaaagatcacagacatgtcc
aaggcatcaatgagcagccgccctgagcccggctacgagaacatggaccacttctccatc
aatgtggactacgtggctgagatgctgaggaccatcgagttccagacagagccactgggc
gaggatgagggtgatggacctggggacggcagtgaggccgcaacggatgaggaccggctg
gacagcctggaggtgcccgaagctgctgaagatgtggggccgaggcagaagccagcaagt
tctccccatggtcagcactga
DBGET
integrated database retrieval system
