Aphelocoma coerulescens (scrub jay): 138109285
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Entry
138109285 CDS
T10543
Symbol
CNOT6L
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138109285 (CNOT6L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138109285 (CNOT6L)
Enzymes [BR:
acoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
138109285 (CNOT6L)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138109285 (CNOT6L)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138109285 (CNOT6L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
138109285
NCBI-ProteinID:
XP_068868532
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All DBs
Position
4:complement(2087080..2108435)
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AA seq
554 aa
AA seq
DB search
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLND
NNLTRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILSLYQDPDGTRKLLNYMLDNLAVHPEQLPPRPWITLKERDQILP
SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQ
YFTLFLPALKERGYDGFFSPKSRAKIMSEQEKKHVDGCAIFFKTEKFTLVQKHTVEFNQV
AMANSEGSEAMLNRVMTKDNIGVAVVLEVHKELFGASMKSLHVDKQLLIVANAHMHWDPE
YSDVKLIQTMMFVSELKNILEKASSRPSSPTADPNSIPLVLCADLNSLPDSGVVEYLSNG
IVADNHKDFKELRYNECLMNFSGNGKNGASEGRITHGFQLKSAYENNLMPYTNYTFDFKG
VIDYIFYSNTHMNVLGVLGPLDPQWLVDNNITGCPHPHIPSDHFSLLTQLELHPPLLPLV
NGVHLPSRSRKLHF
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatcctcgcagaatttacaccatcatgtcagcg
gaagaggtggccaatgggaagaagtcgcactgggctgaattagagatctcggggagagtg
cggagcttaagtacgtcgctgtggtcgctgacacacctgactgctctgcacctcaatgac
aacaaccttactcgcattccacctgatattgccaagcttcacaatctggtttacctggat
ctgtcatccaacaaactcagaagtttaccagcagaactaggaaacatggtgtctctcagg
gaattgcttttaaataacaatctgttacgggttttgccttatgaacttggacggctcttc
cagctgcaaaccctgggtttgaaaggcaatcctttatcccaagatattctcagcctctac
caggatccagacggaacccgaaagctactgaactacatgcttgacaatctagcagttcat
ccagagcagctgcctccaaggccatggattactttaaaagaacgagaccaaattctgccc
tcagcttcatttacagttatgtgttacaatgtgttgtgtgataaatatgccacccggcag
ctctatggctactgcccatcttgggcactcaattgggagtacaggaaaaagggaatcatg
gaagaaattgtcaactgtgatgcagatatcattagtcttcaggaagtggaaacggagcaa
tacttcacccttttcctgccagccttgaaagaacggggatacgacggcttcttttctcca
aagtcacgtgccaaaatcatgtccgagcaggagaaaaagcacgtggacggctgcgcgata
ttcttcaaaacggagaagttcacactggtgcagaagcacacggtggagttcaaccaggtg
gccatggccaactcagagggctcggaagccatgttgaacagagtgatgaccaaggacaac
atcggagtcgccgtggtgttggaggtgcacaaggaattatttggagcaagtatgaaatcg
cttcacgtggacaaacagctgctcatcgtggccaatgcccacatgcactgggaccccgaa
tactcagatgtaaaactcattcagaccatgatgttcgtctcagagctgaaaaacatcctg
gagaaagcctcaagcaggcccagtagcccgacagcagatcccaactctatccctctggtg
ctgtgtgcggatctcaactcactgcctgattcaggtgtggtggaatacctgagcaatggc
atagtagctgacaaccacaaggacttcaaggagctgcgctacaacgagtgtctcatgaac
ttcagtggcaacgggaagaacggagcctcggagggcaggatcacgcacggcttccagctc
aagagcgcctacgagaacaacctgatgccttacaccaattacacttttgacttcaaaggt
gtgattgactacattttctactccaacactcacatgaacgtgctcggagtcctggggcct
ttggaccctcagtggctggtggacaacaacatcacggggtgcccgcacccgcacatcccc
tccgaccacttctccctgttgacgcagctggagctccacccgccgctgctgcccctggtg
aatggggtgcacctgccctcccgcagtaggaagctgcacttctaa
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