Aphelocoma coerulescens (scrub jay): 138109389
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Entry
138109389 CDS
T10543
Symbol
PCDH18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
acoe04515
]
138109389 (PCDH18)
Cell adhesion molecules [BR:
acoe04515
]
Cadherins
Protocadherins
138109389 (PCDH18)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Syndecan
Cadherin_C_2
PAH
PepSY
Motif
Other DBs
NCBI-GeneID:
138109389
NCBI-ProteinID:
XP_068868779
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Position
4:complement(10545301..10555172)
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AA seq
1135 aa
AA seq
DB search
MCQIGGKMHFLFIFALIIISCNNAVLGKNLKYRIYEEQKVGSVIARLSEDVADVLLKMPN
PSSVRFRAMQRGNSPLLVVREDNGEISIGAKIDREQLCQKNLNCSIEFDVITLPTEHLQL
FHVEVEVLDINDNSPQFSRALIPIEISESAAVGTRIPLDSAFDPDVGDNSLHTYSLSAND
FFSIDVRTRTDGAKYADLIVVRELDRELKSSYELQLTASDKGVPQRSGSSLLKISISDSN
DNSPVFEQQSYIIQLLENSPIGTLLIDLNATDPDEGANGKVMYSFSSHVSAKIIETFRID
PEKGHLTLLKQVDYEVTKSYEIDAQAQDMGPNSIPAHCKIIIKVVDVNDNKPEINLNLMS
TEREEVAYISEGSPLDTFVALVRVQDKDSGVNGEIVCKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDKGMPSLSTVKHFTVQISDENDNPPRFQTNRYEVVILENNSP
GAYITSVTATDPDLGDNGQVTYTILENSVLGSSITTYVTIDPSNGAIYALRTFDHEEVNQ
IAFVVQARDGGSQQLVSNTTVVLTIIDENDNAPVIVGPALHNSTAEISIPKDAEIGFLVT
RIRATDRDSGMNSELSCSIAADKENSIFVMDPQTCDISINVSVESVPVKQWEVLVIVQDK
GSPQLSTKALLKCTILEHVYSFSSTEATLVSQPSLDISMITIISLGSICAVLLVIMVIFA
TRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTVNGTLPIRSHHRASPSS
SPALERGQMSSRQSHHSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQG
QYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRESPIDRLLGEGF
SDLFLADGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFQSPQQHL
HQQHHQGLEEDAQAADAGEKKKSFSTFGKDCQSEEESGDTCTSSLLSEMSSVFQRLLPTS
LDAYTECNEMDRSNSLERRKGHLPAKTVNYPPGVAAWAASTHFQNPANNGPTLGTHSGVQ
PSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQN
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcaaatcggcggtaaaatgcactttctattcatttttgcactgatcataatatct
tgcaataatgctgtgctgggcaagaatttgaaatacaggatttatgaggagcagaaggtt
ggatcagtaattgcaagactatcggaggatgttgctgatgttttattaaaaatgcctaac
ccttcctcagttcggtttcgagccatgcagaggggaaattctcccttgcttgtagtccgt
gaggataatggagaaatcagcataggagctaaaattgatcgggaacaactatgccagaaa
aacttaaactgctccatagagtttgatgtgatcactctgcccactgaacatctgcagctt
ttccatgttgaagttgaagtgctggatattaatgacaactctccgcagttttccagagct
cttatccctattgagatatcagagagtgcagctgtaggaactcggattcctttggacagt
gcttttgatccagatgtgggagacaactcccttcacacttattccctttctgcaaatgat
ttttttagcattgatgtgagaaccaggactgatggtgctaagtatgcagacctgatcgtg
gttagagagctggaccgtgagttgaagtcgagttatgaactccaactcactgcctctgac
aaaggagtgcctcagagatctgggtcatccctactgaaaatcagcatttctgattccaat
gacaacagccctgtgtttgagcagcagtcgtatattatccagctcttggaaaactctccc
attgggactttgctcatagacctcaatgctactgatccagatgagggcgccaatgggaag
gtcatgtactcctttagcagtcatgtgtctgccaaaattatagaaacttttaggatagac
ccagaaaaaggtcacctgaccctgctgaagcaagtggactatgaagtaaccaaatcttat
gaaattgatgctcaagctcaggatatggggccaaattctattccagctcactgcaaaatt
ataattaaggttgtggatgtgaatgacaacaagccagaaattaacttaaatctgatgtcc
acagagagagaagaggtagcttacatttctgaagggtcacccctggacacctttgttgcc
ctggtcagagtgcaagacaaggactctggtgtgaatggagagatcgtttgtaagctccac
gggcatggccactttaaacttcaaaagacttatgaaaataactatttaatcttgactaat
gccactctagatagggaaaagagatctgaatacagtttgactgtaatagcagaggacaag
ggaatgccaagtctctccacagtgaaacactttactgtccaaatcagtgatgaaaatgac
aacccaccccgcttccaaacaaacagatacgaagttgttatcttggaaaataactctccc
ggagcatacatcacatcagtcacagccacagacccagatctaggcgacaatgggcaggtg
acatacactattttggagaactctgttttgggaagttctataaccacctatgtgaccatt
gatccctctaatggggcgatctatgccctgcggacctttgatcatgaagaagtaaatcaa
attgccttcgtggtccaagctagggatggagggagccagcagcttgttagcaacaccacg
gttgtactcaccatcattgatgaaaatgataatgctcctgtcatcgtggggccagcgctg
cacaacagcacagcagaaatctcaatccctaaagatgctgaaattggctttcttgtcacc
aggataagggctacagacagagactctggtatgaactctgaactcagctgctccatagca
gctgacaaggaaaacagcatctttgtgatggatccccaaacttgtgacatctctatcaat
gtgagtgttgaatcagttccagtaaaacaatgggaggttttagtgatagtccaggataaa
ggcagccctcagcttagtactaaagctcttctgaaatgtaccattttggagcatgtttat
tcattttcaagcaccgaagcaactttggtaagccaaccctccctggacatctccatgata
acgattatatccttaggatcaatatgtgctgtgttgttggttattatggttatctttgct
acgaggtgcaatcgagagaaaaaggacaccaggtcttacaactgtcgtgtggctgaatca
acctaccagcaccatccaaaacgtccctccaggcagatccacaaaggggacataacactg
gtgccaacggttaatggcactctacccatcagatctcaccacagagcttcgccgtcatcg
tccccagccctggagaggggtcaaatgagcagccggcagagccaccacagccaccaatca
ctgaacagcctggtgaccatctcctcgaatcacgtgcccgaaaatttctccctcgagctc
acccatgctacaccggctgttgagcaggtttctcagcttctctccatgcttcaccagggc
caatatcaaccaaggccaagttttcgaggcaacaagtattccagaagctatagatatgcc
ctgcaagatatggataaattcagcttgaaagacagtgggcggggtgatagtgaagctgga
gacagtgattatgatttggggagagagtctccaattgacagacttcttggggaaggattc
agtgaccttttccttgcagatgggagaattcctgcagcgatgcggctatgcacggaggag
tgcagggtcctgggccactctgaccagtgctggatgccaccactgccctctccctcctct
gactacagaagcaacatgttcatccctggggaggagttccagtcaccccagcagcacctg
catcagcagcatcatcagggcctcgaggaggatgcccaggcagctgatgccggtgagaag
aagaagagtttttcaacatttgggaaggattgccagagtgaggaggaatcaggggacacc
tgcacctcctccctcctctctgaaatgagcagcgtcttccagcgcctgctgcctacctcg
ttggacgcctacacggagtgcaatgagatggatcgctccaactcgttggagcgcagaaag
ggacatttgccagccaagactgtaaattatccaccaggggtggcagcctgggcagccagc
acacatttccaaaaccctgccaacaatgggcccactctggggactcactcgggagtgcag
ccttcgtccaaatggctgccagccatggaggagatcccggagaattacgaagaagatgat
tttgacaacgtgctcaaccacctcagcgatggcaaacatgaactcatggatgccagtgag
ctggtggcagaaattaacaagctgctgcaagatgtccggcagaactaa
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