Aphelocoma coerulescens (scrub jay): 138109440
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Entry
138109440 CDS
T10543
Symbol
LRBA
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
acoe04131
]
138109440 (LRBA)
Membrane trafficking [BR:
acoe04131
]
Endosome - Lysosome transport
Others
Others
138109440 (LRBA)
Endosome - Golgi transport
138109440 (LRBA)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
138109440 (LRBA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Beta-prop_IFT122_1st
Laminin_G_3
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Neurobeachin
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
Beta-prop_ACSF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
SUKH_6
Motif
Other DBs
NCBI-GeneID:
138109440
NCBI-ProteinID:
XP_068868918
LinkDB
All DBs
Position
4:15816018..16188638
Genome browser
AA seq
2854 aa
AA seq
DB search
MASEGKQVVQPTGDDGGGGAGKEGNAAEGGSVLQPLNPGVPIRGIKMKFAVLTGLVEVGE
VSNRDIVDTVFNLLVGGQFDLEMNFIIQEGEGITCMVDLLDKCDITCQAEVWSMFTAILK
KSIRNLQACTEVGLVEQVLKRIDRADNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGE
KGRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRM
DPVNNINVDKDKPYLYCFRTNKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKW
YMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCG
QMTSVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLDEHHKLLLYDGKLSSAIAF
MYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSALHSIGGVQVLFPL
FAQLDYRQYSSDHIDTTVCSTLLAFIMELLKNSIAMQEQMLSCKGFLVIGYSLEKSSKAH
ISRAVLELCLAFSKYLSNLHNGVPLLKQLCDHVLLNPAIWIHIPAQVQLTLYTYLSTEFI
ATVNIYGAIRRVGTVLLVMHTLKYYYWVVNPQDRSGITPKGIDGPRPTQKEILSLRAFLL
MFIKQLVMKDYGIKEDELQAILNYLLTIHEDDNLMDVLQLLVALMSEHPSSMIPAFDQRN
GLQVVYKLLASQSEGIRVQALKVMGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTSLF
TMTTYNVLFEILTEQICTQVIHKQHPDPDSTVKIQNPQILKVIAVLIRNSPQCPETLEIR
RAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCCFNPKTSEEQKITEMVYTIFRILLY
HAIKYEWGGWRVWVDTLSITHSKVTFEMHKESLSQMYKEYQGKGGEGSGVHSSTPIRTIS
GISKEAETRGKQQSLELKEDAPAPSCVTDGDTECRTEKKETENSSDGGQQTNSVSNHKEQ
SEGEDGDTTQDLKAVSCVEFSPEPETVKPSVSEISTGIAEAIEDSSKADELVEETVAVTA
ASLAMQTPVEGETPTSPEKLEKSAVEVEDEDDFVDLKDESSLPSEEFAERSKECGSNESK
VTKQEETTEKQPESVRLKPEDMESVDEKKQELTLPETVSSAVPEAGTQSDSAGKKKLKEG
NIVSSETRTTVENANARVAEPAGASDKRIAKLDVSSVASDTERLELKANTCLEAPLPPRS
IPEPSRQQVSSGQELAAPLDGQRRDTRSTVFRIPEFKWSLMHQRLLTDLLFSIETDIQMW
RSHSTKTVMDFVNSSDNVVFVHNTIHLISQVMDNMIMACGGILPLLSAATSATHELENIE
PTQGLSVEASLTFLQRLINLVDVLIFASSLGFTEIESEKNMSSGGILRQCLRLVCAVAVR
NCLECQQHAQMKPIGDTGKNQKAVQGFIGSGKSAAKSPVDIVTGGISPIRDHDRLLQDMD
INRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPPNERRPPNQSQSLKESE
NENNETPAAVMGNPSAAFGASASTEDSEGTASLQRRDSGLGEEAAPAQTNRSGSAAEAGP
LSVSAGPDAVSEVLCTLSLEVNKSQEGRSETGTEESKSVASVPAAKNVNVKDILRSLVST
PADGTAVDAALLPPTFLGVLGDGAAEQPVQFHSFDRSVVVPTKKSNISSTAAIGVPTNAV
SVVSSLDSAQAPDLSGESPGRGSSNSKLPSVPTVSSVPEDSASNMSITDRLEHALEKAAP
LLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKN
AGLAFIELVNEGRLLSQTMKEHLVRVANEAEFILSRQRAEDINRHAEFESLCAQYSADKR
EEEKMCHHLITAAKYRDQVTATQLIQKIINILTDKHGAWGSSAPSRPREFWRLDYWEDDL
RRRRRFVRNPLGSTHPEATLRAAGEHAPDEDILVKGKQSIKSQVLGNQNSESEILLEGDD
DIMSFMEEREVENLTGPVALSTPAQLVAPSVVVKGTLSITLSELYFEVDEEDPSFKKIDP
KILAYTEGLHGKWLFSEIRSIFSRRYLLQNTALEIFMANRVGVMFNFPDQATVKKVVNCL
PRVGIGTIFGLPQTRRISLASPRQIFKASNMTQRWQHREISNFEYLMFLNTIAGRTYNDL
NQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFH
YGTHYSTASFALTWLLRIEPFTTLFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKEL
IPEFYYLPEIFVNSNNYNLGVMDDGTVVSDVELPPWAKTPEEFVRINRLALESEFVSCQL
HQWIDLIFGYKQQGPEAVRSLNVFYYLTYEGAVNLSSITDSVLREAVEAQIRSFGQTPSQ
LLIEPHPPRSSAMQVYLLLQSPLMFTEQAQQDVIMVLKFPSNSPVTHVAANTQPGLATPA
VITVTANRLFAVNKWHSLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQ
VHSQCFVITSDNRYILVCGFWDKSFRVYSTDSGKLMQVVFGHWDVVTCLARSESYIGGNC
YILSGSRDATLLLWYWNGKTNIIGDNPRGDFATPRAVLTGHDYEITCAAICAELGLVISG
SKEGPCLIHSMNGDLLRTLEGPERLQGPESCLRPKLIQASREGHCVIYYENGLFCVFSVN
GRLQATMETDDKIRAIQLSRDGQYLLTGGDNGVVMVWQVWDLKQLFAYPGCDAGIRSMAL
SYDQRCIMTGMASGSIVVFYNDFNRWHHEYQTRY
NT seq
8565 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgaaggcaaacaagttgttcagccaacaggtgatgatggaggaggaggagcg
ggaaaagaaggaaatgctgccgaagggggaagtgtgctgcagcctttgaatccaggagtc
cctatccgaggcatcaagatgaaattcgctgtgctgacaggactggtggaagttggtgaa
gtgtccaacagagacatagttgacactgtgtttaatctgctcgtagggggccagtttgac
ttggaaatgaactttatcatccaagaaggagagggcatcacctgcatggtggacttactg
gataagtgtgacatcacctgccaggccgaggtttggagcatgtttacagcaatcctgaag
aaaagtatacggaatctccaggcctgcacagaagtggggctcgtggaacaagtgctcaag
aggattgatagagctgacaacatgattgcagatctcttagtggacatgctgggtgtgttg
gctagctataacctgacagttcgagagctgaagttattcttcagcaagctgcaaggagaa
aaagggagatggccaccacatgctggaaagttattgtctgtgttaaaacacatgcctcag
aagtatggacctgatgccttcttcaactttccaggaaaaagtgctgcagctattgcctta
cctcctatagccaagtggccataccagaacggatttactttccacacttggctaagaatg
gatcctgtaaataatattaatgtggataaagataagccttatttatattgttttcgaaca
aacaaaggacttggttattctgctcactttgttggaggctgcttgattgtaacgtccata
aaatcaaagggaaaaggtttccagcactgtgtgaaatttgatttcaagccacaaaagtgg
tacatggtgactatagtgcacatctataaccgctggaagaacagcgaactccggtgttac
gtgaacggggagctggcatcttacggggaaataacgtggtttgtcaacaccagtgataca
tttgataaatgtttcctgggttcttcagaaacagcagatgccaatcgagtgttttgtggg
cagatgacatctgtttacctttttagtgaggctctcaatgctgctcagatctttgccatt
tatcagctcggcctgggatataagggaacgttcaagttcaaggcagaaagtgatctcttc
ctcgatgaacatcacaaattgttgctatatgatggcaaactctccagtgctattgctttt
atgtacaatccaagggctacagatgcacagctgtgtctagagtcatcccctaaggataac
ccttctatttttgttcattcaccacatgccctcatgctgcaggatgtgaaagcggtctta
acgcactctatccaaagtgccctgcactccattggaggagtgcaggtgcttttccctctc
tttgcacagttggattataggcaatattcctcagaccatattgacacaactgtttgttct
actttactggcattcatcatggagttgttgaagaactctattgctatgcaagagcagatg
ctttcctgtaaaggcttccttgtaataggatacagcctggaaaagtcttccaaagcccac
atttccagagctgtactagaactttgccttgccttctcgaaatacctgagcaacttacac
aatggggtgcccttgctgaagcagctgtgtgatcatgttctcctgaatcctgcaatatgg
attcatatcccagcacaggttcagctgaccctgtacacttacctgtctacggagttcatt
gccactgttaacatatatggagcaatccggcgggttgggacagtgcttttggtcatgcac
accctcaagtattattactgggtggtgaaccctcaggatcgcagtggaattactcccaag
ggcatagatggtccacggcctactcaaaaagagattttatccctgcgagcatttttgttg
atgttcattaaacagcttgtgatgaaggactatggaataaaagaagatgaattgcaggct
atcctcaattacctgctcactattcatgaggatgacaatctaatggatgtcttgcagttg
ctggttgctctgatgtcagagcatcctagttctatgatccctgcgtttgatcagaggaat
ggattacaggtggtctacaagcttttagcatcacaaagtgaaggcatcagggtgcaagct
ctgaaagtgatgggatatttcttaaagcatcttgctccaaagagaaaagctgaagtcatg
cttggacacggattgttctctttgttggctgagaggctgatgcttcagacaagcttattc
accatgaccacatacaatgtcctgtttgagattctgactgaacagatttgcactcaagta
atacataaacaacatcctgacccagattcaacagtgaagatacaaaatcctcagattttg
aaggttattgcagtcctgatccgtaattccccacagtgtcctgaaactctggagatccgg
cgagccttcctttcggatatgattaaactttttaataacagcagagaaaacaggaggagt
ttgttgcagtgctctgtctggcaggagtggatgctttccctttgttgttttaatccaaag
acttctgaggagcagaagataactgagatggtgtacaccatatttcggattttgctgtac
catgcaataaaatatgagtggggtggctggcgtgtgtgggtggacacactgtcaatcaca
cattcaaaggtaacttttgaaatgcacaaagagagtctttctcaaatgtacaaggagtac
caagggaaaggaggtgaagggagtggagtacattcttcgactccaattagaacaatctct
gggattagcaaagaagctgaaaccaggggaaagcagcaatctttggagttaaaagaagat
gctcctgctccttcctgcgttactgatggagataccgagtgcagaactgaaaaaaaagag
acagaaaactcatcagatggtggccaacaaacaaattcagtgtctaatcataaggagcaa
tcagagggagaggatggggatactacacaggatttaaaagcagtgtcttgtgtggagttt
tctccagaaccagaaacggtgaagcccagtgtctcagaaatcagtactggaatagctgaa
gcaattgaagattctagcaaagctgatgagctcgtggaagaaacagttgctgtcactgct
gcttctttagccatgcaaactcctgtggaaggagaaactcccacaagtccagaaaaactg
gaaaaatcagccgtagaggtggaagatgaagatgactttgttgatttgaaggatgaaagt
agtttgccttcagaagagtttgcagaaaggagcaaggaatgtggctctaatgaaagcaaa
gtgacaaagcaggaagaaacaacagagaagcaacctgaatctgtgcgtttgaaacctgag
gatatggaaagtgtggatgagaagaaacaagaactgactttgccagagacagtgagttct
gccgttccagaagcaggaactcagtcggattcagcaggaaaaaagaagctgaaggaagga
aacatagtttctagtgaaaccagaacgactgtggaaaatgcaaatgcacgtgtggcagag
cctgctggagcctctgacaaaagaattgccaagcttgatgtttctagtgttgcatcagat
acagaaagactggagctgaaagctaacacatgtctagaagcacctctgccccccagatcc
atacctgagccctcaaggcagcaggtttcctcgggacaagagctggctgctccattggat
gggcagaggagagacacgaggtcaactgtgttccgtattccggagttcaagtggtcgctg
atgcaccagcgcctgctcacagacctgctcttctccatagaaacagatattcagatgtgg
agaagccattctacaaaaactgtgatggactttgtgaatagcagtgacaatgtggtgttt
gtgcacaacacgatccacctcatctctcaagtgatggacaacatgatcatggcctgtggt
ggtatcttgccattgctttctgctgccacatctgctactcatgaattggagaatattgag
ccaactcaaggactttcagtagaagcatctttaacatttctccagaggttaatcaacctt
gtggatgtgttaatttttgcaagctctcttggtttcactgaaattgagtctgagaaaaat
atgtcatctggaggaattctgagacaatgtcttcgtctagtatgtgcagtagcagtaaga
aattgcttggagtgtcagcagcatgcacagatgaaacctattggagacactgggaagaac
caaaaagcagtgcaaggctttataggatcaggaaagtctgcagcaaagagtccagtggac
attgtgacgggtggcatttctccaatacgggaccatgacagacttctgcaggatatggat
attaatcgcctccgagcagtagtgttcagagatatagaggatagtaaacaggctcagttt
ttggctttggctgttgtatattttatttctgtgctcatggtttcgaaatacagagatata
ctggaacccccgaatgaaagacggccaccaaaccaaagccagtcactcaaggaatcagaa
aatgaaaataatgagactcctgctgcagttatgggaaacccatctgctgcttttggtgct
tcagcctccactgaagattcagaaggtaccgcatctctgcaaagaagggattctggtctt
ggggaggaagcagctccagcacaaaccaaccgttcaggaagtgctgctgaagcaggacct
ctgagtgtcagtgcaggcccagacgcagtcagtgaagtcctgtgcacactctcgttagaa
gtcaataagtctcaggagggcagaagtgagacaggaactgaagagagtaaatctgtggct
tctgtgccagctgcaaaaaatgtcaatgtgaaggacatcttgagaagcttggtgagcaca
ccagctgatgggactgccgtggatgctgctcttctgccaccaaccttcctcggagttctt
ggcgatggagctgctgagcagcctgtgcagttccattcctttgacaggagtgttgttgta
ccaacgaagaaatcaaacatttcctctacagctgctattggtgttcctacaaacgctgtc
agtgtggtttcttctttagattcagcccaagcaccagatttgtcaggagaatctcctgga
aggggatcatctaattcaaaattgccatctgttcctacagtttcttcagtgcctgaggat
tctgcctccaatatgagtattacagacaggcttgagcatgctttggaaaaagctgcccca
cttctgagagagatttttgtggattttgctccctttctttctcgaactcttttgggcagc
catgggcaggagttgctgatagaaggtacaagtcttgtgtgcatgaaatccagcagttca
gttgtggagctggtgatgctcctttgctctcaggagtggcaaaactctatacagaagaat
gctggccttgcctttattgagcttgtcaatgaaggaaggttgctgagtcaaaccatgaag
gagcatctggtacgagtggctaatgaagcagaatttatcctgagcagacagagggcagag
gatattaaccgccatgctgaatttgagtcactgtgtgcccagtactctgcagacaaacgg
gaagaagaaaaaatgtgtcatcatttgatcacagcagcgaagtaccgggaccaggtgact
gcaacacaactaatacagaaaattatcaacatcctgacagacaagcatggagcctgggga
agctctgcaccaagtcgtcctcgtgagttctggcgcctcgactactgggaagatgacttg
cggcgccggcgacgatttgtgcgtaacccccttggatcgacacatcctgaagcgacactc
agggcagccggagagcatgctcctgatgaggatatacttgtcaaaggaaagcagtccatc
aagagtcaagttttaggaaaccagaactcagaaagcgagattctcttggaaggggatgac
gatatcatgtcattcatggaggaaagagaagtggagaacttgacaggtccagtggccctc
agcacaccagctcagcttgtggcaccctcagtagtagtgaaaggcactctttccatcact
ctttctgagctctactttgaggtggatgaagaagatcctagttttaagaaaatcgaccca
aagattctggcatatacagaagggctccatggaaaatggctcttctcagagattcgatct
atcttttcccgacgttaccttttgcaaaatacagcactggagatattcatggcaaataga
gtgggagtcatgttcaacttccctgaccaagcaacagtgaagaaagtggttaactgtcta
cctcgggttggtattggtaccatctttggactaccccagaccaggcgcatttctttggct
agtccacgacagatcttcaaagcttccaatatgacccagcgatggcagcaccgagagatt
tccaactttgaatacctgatgtttctaaacactatagcaggtcgaacttacaatgatttg
aatcagtaccctgtcttcccttgggttatcaccaactatgagtcagaggagttggacctt
acacttcctagcaacttcagggatttgtcaaagcccattggagcgttgaacccaaagaga
gcagcgttctttgctgagagatacgagtcatgggaagacgatcaggtcccaaaatttcac
tatggcacccattattcaacagcaagttttgcactcacgtggttgttaaggattgagccc
ttcacaacactcttcctaaatctgcaaggtgggaagtttgatcatgcagataggactttt
tcgtctatttcaagagcgtggcgcaacagtcagcgtgacacttccgacatcaaggaattg
attcctgagttttattacctcccagagatatttgtcaacagcaacaattacaatctggga
gtgatggatgatggaacagtggtgtctgatgttgaacttccaccgtgggccaaaacccca
gaagaatttgttcgcataaacaggctggcgttggaaagtgagtttgtttcctgccagctt
caccagtggattgatctgatttttggctacaaacaacaagggccagaggctgttaggtct
ctcaatgtattctactatttgacttatgaaggagctgttaatttaagttcaataacggat
tctgtactgagagaggctgtggaagctcaaataagaagttttggacagaccccttcccaa
ctactcatagaaccacatcctccacgaagttctgccatgcaggtgtatctcctcctgcag
agccccttgatgttcacagagcaagcccagcaggacgttatcatggtcctgaagtttccg
tccaactccccggtcactcacgtggctgccaacacccaacccggcctggccactcctgct
gtgatcacggtcactgcaaacaggctctttgctgtgaacaagtggcacagcctccctgct
catcaaggtgctgtacaagaccagccttaccagctgccagtggaaatcgatcctctcata
gccagcaatacaggtatgcacaggaggcaaatcactgaccttttagaccaaagcattcag
gtacattcccagtgttttgtcatcacctctgacaatcgttacatcttggtctgtggcttc
tgggacaagagtttccgtgtttattctactgactcaggtaaactgatgcaggtagtgttt
ggccactgggatgttgtaacctgtctggctcgttccgagtcctacattggagggaattgt
tacatcctctcaggatcccgggatgcaaccttgctgctctggtactggaatggcaaaacc
aacatcattggtgataacccaagaggtgattttgcaactcctcgagctgttctgacagga
catgactatgagatcacctgtgctgccatttgtgctgagcttggcctggtaataagtggt
tcaaaagaaggaccatgtctcatacattctatgaatggagatctactgaggacattagaa
ggtcctgaaagattacaaggtcctgaaagctgcctgagaccaaaacttattcaagcttcc
agagaaggccactgtgtcatatattatgaaaacggcctcttctgtgtgttcagtgtgaat
gggagactgcaagccactatggaaacagatgacaagataagggccattcagctgagtcgg
gatggacagtatctgctcacaggtggagacaacggagttgtcatggtctggcaggtgtgg
gacctcaagcagctctttgcttacccaggctgtgatgctggaatccgatccatggccctg
tcctatgaccaaaggtgtataatgactggaatggcgtccgggagcatcgtggttttctac
aatgatttcaatcgctggcaccacgagtaccaaaccaggtactga
DBGET
integrated database retrieval system
