Aphelocoma coerulescens (scrub jay): 138109516
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Entry
138109516 CDS
T10543
Symbol
SMARCAD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
acoe03036
]
138109516 (SMARCAD1)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
138109516 (SMARCAD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
ERCC3_RAD25_C
CUE
HHH_3
Motif
Other DBs
NCBI-GeneID:
138109516
NCBI-ProteinID:
XP_068869181
LinkDB
All DBs
Position
4:23387797..23507673
Genome browser
AA seq
1059 aa
AA seq
DB search
MGENMATRWFSRVCETLKHSLMCRTCTTYQPRSPLRKVKNMSLYNLDRFRFERKEKGAEQ
ESPCPPAARAEAPDAAAAVGAAGGDEDEGTDDSGPGTPASDVTERAEYSTVPETPEAQRT
MKESYFKRQRGLQFHDVSDSEDEEPRNVTADEEAQAPRAEAAVISEQSDDDDQPEEELPQ
LALVNGGNQQPAVKEDVEEDSRDSKLQTMKELFPQRSDQELLKLIESACTMDEAVAAGLK
LNDKAASAKRKLRDSPTNCKTKNEQVAKKSKASYLDDSEPKRQWERQEMLVKKLQGTFPG
LDKEELREVLQEHNWVFHDALEALKIFADDEEGMEFPPKRKVVDWSESQSDESKEKTKQK
FSEKEQNGFQKKDKGKRSIWSTKRETEHMEDESASEDGGSSLDEDYSSGDEVMEDGYKAK
ILSFLQDASLSELTLIPQCSQKKAQKIIALRPFNSWEALFTKMTKTTGLSEDIVWNCKIL
LKERDVVLKLMNKCEDISNKLTKQVTRITGDGGCGWNIEQPSILNRSLKLKPYQKIGLNW
LALLYKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPASTLDNWIREVHLW
CPELNVLFYYGSQEDRKHLRVDIHNKVVDFNVIVTTYNSAISSSDDRGLFRRLKLNYAIF
DEGHMLKNMSSVRYQHLMTINAKNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIR
RMFSSKTKSAEEQSIYEKERIAHAKQIIKPFILRRVKDEVLKQLPPKKDLIELCAMSEKQ
EQLYFALLNKLKKTINSNEKNSDMGNAMMQLRKMANHPLLHRQYYTNDKLRTMSTLMLKE
PTHCDANPDLIFEDMTVMTDFELHVLCKQYSHISDFTLDMDQILDSGKFRALERILSDLK
EKGDRVVLFSQFTMMLDILEVFLKHWQHRYIRLDGKTQISERIHLIDEFNTDMGIFVFLL
STKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTREVQVIKLISKETIEETM
LKISQQKLKLEQDMTAAESGEEGTIPADIATLLKASMGL
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagaacatggctacgaggtggttttccagggtatgtgagactctaaagcacagt
ctgatgtgcagaacttgcactacctaccagcctcggtcacctctcagaaaggttaagaat
atgagcctctacaatttggaccggttccgcttcgagaggaaggagaagggagcggagcag
gagtcgccttgcccgccggcggcccgggcggaggcacctgacgctgctgccgcggttggt
gccgctggaggggatgaggatgaaggtacggatgacagcgggccaggcactccggcttcg
gacgtgacagagagggctgagtattccactgtgccagaaactcctgaagctcagaggaca
atgaaagagtcctatttcaagcgccagcgagggctgcagttccacgacgtctctgacagt
gaggatgaagagccaagaaacgtcactgctgatgaagaagcccaggctccgagggcagag
gcggccgtaatctctgaacagtctgatgatgatgaccagcctgaagaagaactgccccag
ctggcacttgtaaatggtgggaatcagcagccagctgtgaaggaggatgtagaggaagat
agcagagactcaaagctgcaaacaatgaaggaactttttccccaaagaagtgaccaagaa
ttattaaaactgatagaatcagcgtgcacaatggatgaagcagtagctgccggtttgaag
ctcaatgacaaagctgcctctgctaaaaggaaactaagagattctcccacaaattgcaaa
accaaaaatgagcaagttgcaaaaaagtcaaaagctagttatctggatgactcagaaccc
aaaagacaatgggagaggcaagagatgcttgtgaagaagttgcaaggtacattccctgga
ttggataaggaggagctgagagaggtacttcaggaacataactgggtgtttcatgatgca
ctggaagccctgaaaatatttgcagacgatgaggagggcatggaatttcctcccaaaagg
aaagttgttgactggagtgagagccaaagtgatgagagtaaagagaagacaaagcagaaa
ttttctgagaaagagcagaacggctttcagaaaaaggacaaaggcaaaaggagcatttgg
agcactaaaagagaaacagagcacatggaggacgagtccgcttccgaagatggcggaagc
tccctggacgaggactacagcagcggcgatgaagtgatggaggatggctacaaagcgaaa
atcctcagcttcctgcaggatgcttccctgagcgaactgactctgattccccagtgttct
cagaaaaaggctcagaagataatagcactccggccctttaacagctgggaggctctgttt
acaaaaatgacaaagactactggtttgtcagaagatatagtgtggaactgcaagatactg
ctgaaggagagggatgtggttctaaagctcatgaataaatgtgaagacatttccaataaa
ctgacaaaacaggtcaccaggattactggagatggaggatgtggatggaacatagagcaa
ccctccattctgaatcgcagtttgaaactgaagccatatcagaagattggtttgaactgg
ttagcactgctgtataaacacggattgaatggcatcttggctgatgaaatgggcttagga
aaaacaattcaagctattgcatttctggcttatctctaccaagagggcaataagggtccc
catttgatagttgtaccagcttcaacgttagataactggataagagaagttcatctgtgg
tgtcctgaactgaatgtccttttttattatggatcccaagaagacaggaaacatctcagg
gtggacattcataataaagttgtcgatttcaatgtgattgtgactacgtacaactctgca
atcagcagctcagatgatcgaggactgttccgcaggctgaagcttaactatgcaattttt
gatgaaggtcatatgctcaagaacatgagctctgtccgctaccagcacctcatgacaatt
aatgccaagaatcgcttgctgctaacggggactcccgttcaaaataatctgttggaattg
atgtccctcttgaactttgtcatgcctcatatgttcagcagtagcacaagtgaaattcga
aggatgttctcctcaaaaacaaagagtgctgaagaacaaagcatatatgagaaggagaga
attgcacatgcaaaacagataataaaaccattcatcttgagaagagtaaaagatgaggtc
cttaaacaactacctcccaaaaaagatctcattgaactttgtgccatgtctgagaaacag
gaacaactatactttgctctcttaaacaagctcaagaaaactattaacagtaatgagaaa
aactctgatatgggaaatgcaatgatgcaacttagaaaaatggccaatcaccctcttttg
catcgtcagtattacacaaatgacaaactcaggacaatgtccacacttatgctcaaggaa
cccacacattgtgatgctaaccctgaccttatctttgaagatatgacagtaatgacagat
tttgagctgcatgtgctttgtaagcaatattctcacatcagtgacttcacgttagacatg
gatcagatcctggattccggaaagtttagagcactggaacgcattctctccgaccttaaa
gagaagggtgacagagtcgtgttgtttagccagttcactatgatgctggacatcttggaa
gttttcctaaaacactggcaacacagatacattaggctggatggaaaaacgcagatttct
gagcggatacatctgatagatgagttcaatacagatatgggtatatttgtattccttctg
tcaaccaaagctggtggcttgggcattaatctgacctcggccaatgttgttatccttcat
gacattgactgcaacccttacaacgataagcaagcagaagaccggtgccaccgagtaggt
cagacacgagaagtacaagtcataaagctcatcagtaaggagactattgaagaaaccatg
ctcaaaatcagccaacagaaattgaaattagaacaagatatgactgcagcagaatcagga
gaagaaggaaccattccagcagatatagccacactattaaaagcttcaatgggtctctaa
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