Aphelocoma coerulescens (scrub jay): 138109896
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Entry
138109896 CDS
T10543
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03030
DNA replication
acoe03410
Base excision repair
acoe03420
Nucleotide excision repair
acoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138109896 (RFC1)
03410 Base excision repair
138109896 (RFC1)
03420 Nucleotide excision repair
138109896 (RFC1)
03430 Mismatch repair
138109896 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acoe03032
]
138109896 (RFC1)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138109896 (RFC1)
DNA replication proteins [BR:
acoe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
138109896 (RFC1)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
138109896 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
AAA_14
PTCB-BRCT
Rad17
BRCT_2
AAA_30
AAA_5
RuvB_N
AAA_7
AAA_17
AAA_33
RNA_helicase
AAA_16
AAA_18
nSTAND3
TIP49
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
138109896
NCBI-ProteinID:
XP_068870355
LinkDB
All DBs
Position
4:56118197..56152968
Genome browser
AA seq
1313 aa
AA seq
DB search
MGENTFRGTRARRSLHSQNGRDITCLWPGNAFQCCADPGLAARLFWGLRLPQWPKKRRKS
WRPGTALLSVFTQQFSLPARLLCRRPSSTRSSILSCCCSRRRERLNLRRGEGPLPRAHER
GQGRGGRGRECVGGNRAPLGSTAMAPAPARGTPRPPPSPARRGRDGSAARRAAGVGAKAG
AWRRERPARHRDRAAAMDIRKFFGVVPPGKRQECESVKKSERIKNGEGPSSGKKREKEAK
VNNSPSEDDSKQKRTKKKRRIIYDSDSEEEVSSVKKSKKSPEKKAATSKLGKVLKQDPVV
YISETDEEDDFVNRRNSLKPKENGTSAAGCPGTNTVKKGEVKPQAKSKPLSPVKQTPTSA
LDYFGTTSVQRSEKKLVASKRKEPSQSRDSTLDDEAIARQLQLEEDSELERQLHEDEEFA
RTLAMLDETPQKKKARKDTEGEQTVLSISSSPNRTAGYKQSERVKATDSAGAAKNYSAKR
QNKSEQLKEIAEKERGAQNSLSREKAALGKEEKTPPKKEKVSPKKTESISPEDSEKKRNN
YQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVT
GNVSKKTNYLVMGRDCGQSKREKASTLGTKVIDEDGLFDLIRTMPGKKSKYELAAETEAE
KVESRPKKTPQKTEAGKRNFSPYKREANNKYKSTPEKGDNARSAKRETTAIRKLTDFKHH
TVGEKEAPKPKGNLVSEVNEDGTEKLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNW
HKNILEDGQAKPNKTGSKDDGTSFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDT
RSKNSLKEVVAESLNNTSIKDFYSGASSSVSGKHVLIMDEVDGMAGNEDRGGIQELIALI
RHTKIPIICMCNDRNHPKIRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQ
EIILAANHDIRQVLHNLNMWCARDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFTTGEE
AARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIV
DKQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKHDRIIQELAM
HMSLRTQTCKRTVNMEYLSYLRDALVQPLKDFGADGVQQAITFMDSYCLMKEDVENIMEI
STWGGKPSPFSKLDPKVKGALTRAYNKEAHLTPYSLSSVKASKRQSGSAVTLDLSEDLNV
EEVQSDEDEQDTVDSDAMIKQKKVKSSKLTKREKNEETTKKEGKRKEKTRHLE
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaataccttcagaggaaccagagcccgacgctctctgcacagccagaatgga
agggacatcacatgtttatggccaggaaatgcctttcagtgctgcgctgacccgggcctg
gctgcccgcctattttgggggctgcgtttgcctcagtggcctaaaaagagacgaaaatca
tggaggcctggcactgctctcttgtctgttttcacccagcagttcagcctgccggctcgc
ctgctctgccggaggccctcgagcacacgcagctccattttgagctgctgctgctcgagg
cggcgggagcggttaaacctccgccgcggggaggggccgctgccgcgagcacacgaacgc
ggacaggggcgagggggccggggccgggagtgtgttggaggcaaccgggctcccctggga
tccaccgctatggccccggccccggcccggggtacgccccggccgccccccagccccgcc
cgtcgcggccgtgacggcagcgccgcgcgccgggccgcgggagttggcgcgaaggcggga
gcatggaggcgggagcgtcctgctaggcacagggaccgcgccgccgccatggatatccgg
aaattctttggtgttgtaccacctggaaagcgccaagaatgtgagtctgtgaaaaagagt
gaaagaattaaaaatggtgaaggaccctcgagtgggaagaaaagggaaaaggaggctaag
gtgaataattcacccagtgaagatgattccaaacaaaagcggacaaaaaagaagagaaga
ataatctatgattcagattcagaagaggaggtgtcgtcagtgaaaaaatccaagaagtca
cctgagaaaaaagcagctacttcaaaacttggtaaagttctaaagcaggatcctgttgtt
tatatttcagagacagatgaggaggatgattttgtcaatagaagaaattccctgaaaccg
aaggagaatgggacgtcagccgctggctgtccaggaacaaatactgtcaaaaaaggagag
gtcaaaccacaagctaaaagcaaacccctgtctccagtgaaacagactcccacctctgca
cttgattactttgggacaacgagtgtccaacggtcagaaaagaaactggtagcaagtaaa
aggaaagagccttcacaaagcagagatagcacactagatgatgaggccattgctaggcaa
ctgcagcttgaagaagattcagagctggagagacagctgcatgaagatgaagaatttgct
agaactctggccatgttggatgaaacaccgcagaagaaaaaggctcggaaagatacagaa
ggagagcaaacagtactgagcatcagtagcagccctaataggacagcaggatataagcag
tcagaaagagtgaaggcaacagactcagctggtgcagccaagaattattctgcaaagcgt
caaaataaatctgaacagttgaaagagattgctgaaaaagaaagaggtgctcaaaattca
ctatcaagagaaaaagcggctttggggaaagaagagaagacaccaccaaagaaggagaaa
gtctctcccaagaagactgaatctataagtcctgaggactctgaaaagaagcgaaacaac
taccaagcttaccgaagcttccttaatcgtgagggtccgaaagcactaggttccaaagag
atacctcagggagctgaaaactgcttggaaggcctgacatttgtaattacgggtgttctg
gagtgcattgaaagagatgaggccaagtctctgattgaacgttacggaggcaaagtaacc
ggcaatgtcagcaagaagacaaattacctggtgatggggcgagactgcggccagtccaaa
cgtgagaaggcatcaactttaggtacaaaagttattgatgaggatggtctgtttgatctt
attcgaactatgccaggcaaaaagtccaaatatgagctggcagctgaaacagaggcagag
aaagtggagtcaagacctaaaaagacacctcagaaaactgaagctggaaaaaggaatttt
agcccctataaaagggaagctaataataagtacaaatctactcctgaaaaaggagataat
gccagatctgccaagagagaaaccactgctattcggaagctaacggactttaaacatcac
acagtaggggagaaagaagccccaaaacctaaggggaacttggtttctgaggttaatgaa
gatggtacagagaaattgttatgggtagataaatacaagcctgtatctcttaaggcaatt
attggacagcagggtgagcaaagctgtgccaataaactgctccgatggctcagaaattgg
cacaagaatatcttggaagatggacaagcaaaacccaataaaactggaagcaaagatgat
gggacaagttttaaagcagctttactttctggtccacctggagttggtaaaactactaca
gctgctttggtttgtaaggaactggggtatagctacgtggagctgaatgccagtgacact
cgcagcaagaacagtctaaaggaagtagttgctgaatcacttaacaacaccagcatcaaa
gacttctattctggtgcatcctcatcagttagcgggaaacatgtattgatcatggatgaa
gtggatggtatggcaggcaatgaagacagaggagggattcaggagctgatcgctttgatc
cgacacacgaagatacccatcatttgtatgtgcaacgaccgcaaccatcctaaaatccgc
tccttggtccactactgcttggatcttcgttttcagagacctcgtctagaacagatcaag
ggtgccatgatgtctattgcatttaaagaaggtttaaaaattcccccacctgctatgcaa
gagataatcctggcagcaaaccacgacatcagacaggttttacataatcttaatatgtgg
tgtgcaagagataaatcattgacttatgatgaggctaaaacagatgccagcagagccaaa
aaggacatcaaattgggccctttcgatgttgtccggaaggttttcactactggagaggag
gctgctcgtatgtctcttatagacaaatcagatcttttcttccatgattattcgctagct
cctctctttgtacaagagaactacgtgcatgtgaaaccggctgctgctggaggtaactta
aaaaagcacttggtgctcttgagtagagcagctgatagtatatgtgatggtgatatagtg
gacaagcagattcgtagcaagcagaactggaatcttcttccaacacaggctatttatgcc
agcgttctccctggggagctgatgagaggttacatgtcccagtttcctgtctttcccagc
tggctggggaaattttcatccacaggcaaacatgatcgtatcattcaagaactggcaatg
cacatgagtctcagaactcagacatgcaagaggacagtaaatatggaatatttgtcatat
ttgcgggatgcacttgtccagcccttgaaagactttggagcagatggtgtacaacaagct
ataacatttatggactcctactgcttgatgaaagaagatgttgaaaatataatggaaata
agcacatggggaggcaaacccagtcctttttcaaagctggatcccaaggtcaaaggagct
ttgacacgtgcctacaacaaagaggcacatctgactccatattcacttagttctgtcaag
gcatctaaaaggcagtcgggatctgcagtgactttagatctgagtgaagacttgaatgtg
gaagaggtgcagtctgatgaggatgagcaagatactgttgacagtgatgcaatgattaag
caaaaaaaggtgaagtcttccaagctgacaaaaagagagaaaaatgaagaaacaacaaaa
aaagaagggaaaagaaaagagaaaacaagacatttagagtaa
DBGET
integrated database retrieval system
