Aphelocoma coerulescens (scrub jay): 138110002
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Entry
138110002 CDS
T10543
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138110002 (HTT)
04131 Membrane trafficking [BR:
acoe04131
]
138110002 (HTT)
03029 Mitochondrial biogenesis [BR:
acoe03029
]
138110002 (HTT)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138110002 (HTT)
Membrane trafficking [BR:
acoe04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
138110002 (HTT)
Mitochondrial biogenesis [BR:
acoe03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
138110002 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
138110002
NCBI-ProteinID:
XP_068870655
LinkDB
All DBs
Position
4:complement(70077305..70155975)
Genome browser
AA seq
3096 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPAALPEEPLQRPKKELSATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDEAASR
SRSGSIVELIAGGGSSCSPVLARKHKGKVLLGEEEGLDDDSETRSDVSAASFAASVKGEI
TSELASSSGVSTAGSVGSSAADPTGHDIITEQPRSQHTLQSDSVDLASCDLTSTATEGED
DEVLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAANILQDDSSESFRNSSLALQQPHLLKTMSHSRQPSDSSVDR
FTSKEDAADAGDHENKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVSFLEG
KTESLHRGIHHYTGLLKLQQRVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDITMENNLSRV
IAAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIG
MAGLVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDSNQGAAKQEEP
WPALADRALVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG
KERESVEQASVPMSPKKSGEASPASRQADAAGPVPTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TMATVCVQQLLKTLFGTNLASQYDGLSSNPSKAQGKAQRLGSSSLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAISRLRCGENNVSTPE
DRTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI
HIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCQILLLVN
YTNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCD
YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL
AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL
QNSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPATTSPSPLVTSHPLDG
EDQPALETVILDKDWYVSLVRSQCYVKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSL
LAPCLSLGVNELSRDQKNSLFETARRVTLDHVSSAVQNLPANHQVFQPLLPTEPSAYWKK
LSDIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVPPDKEEDILKFVVMSVEALSWHL
VHDQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVEPGN
QLLSPERKKNTSKPLSEGEIDSNAQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPA
FLTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPLGDFGTVFPEIPVEFLQEKEIF
KEFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAI
TSLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRD
NIATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGN
NITPLREEEWGEDEEDENDVPALSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPS
NPSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPAT
CKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPII
SEYLLSNLRGIAHCVNIHNQQHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGS
DESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCM
YTGKEKISPSRITDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDD
FFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQR
TPVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEE
LDRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9291 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgacgaaggccttcgagtcgctgcgctccttccagcagcag
cagggcccggctgccctccccgaggagccgctccagagaccaaagaaagaactttcagct
accaagaaagatcgagtgaatcattgtctaacaatatgcgaaaacatagttgctcagtcg
ctaagaaattctccagaatttcagaaactgctgggcattgctatggaactctttctcctc
tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt
atcaaagctttgatggattccaatcttcccaggttacagttagagctgtataaagagatt
aaaaagaatggtgcttcaagaagtctacgtgctgcactctggagatttgctgagcttgcc
catctagttcggcctcaaaagtgcaggccatacttggtgaaccttttgccctgtctaaca
cggataagtaagagacccgaagaatcggtacaagagacgctggctgcggcaatacccaaa
atcatggcagccttcggcaattttgcaaatgacaatgagattaaggttttgttgaaggct
ttcatagctaatcttaaatccagttcccccactatccgtcgaacagcagcaggatcagca
gtaagcatctgtcaacattcacgacgaacacagtatttttatgcctggttattgaatgta
cttttaggcttgttggttcctgtagaagatgatcgtcctactcttttaattctgggtgtt
ttacttacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacggagatttcaccttcaccagaacaactt
atacaggtttatgaactgactctgcactacacccagcatcaggaccataatgttgtgact
ggagctttagaattgctccagcagctctttagaacacctccccctgaactgctccatgcc
ctgactgcctgcgggggtattgctcaggtcagtgtatccaaagatgaagctgccagcagg
agccgcagtgggagcatagtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaaggtaaagtacttcttggtgaagaagagggcttggatgatgat
tctgaaacccgatctgatgtcagtgctgcatcgtttgcagcttctgtgaagggtgagata
accagtgaactggcttcttcatcaggtgtgtcgaccgctgggtcagtggggagctcagct
gctgatcccacaggacatgacatcatcaccgagcagccccgttcccagcatacgctgcag
tcagactctgtagacctggccagctgtgatttgacaagtacagctactgaaggggaagat
gatgaagttcttagtcgaagctccagccagatcagtgctgtccagtcagatgccactatg
gatttgaatgatggcacacaggcttcctctccaattagtgatagctctcagactactaca
gaaggtccggactctgctgtaaccccttcggacagctctgaaattgttttggagggtgct
gaaggacagtattctggaatgcaaattgggcagctacaggatgaggaagatgaagctgca
aatattctccaagatgattcatcagagtccttcagaaattcttctcttgctcttcagcag
cctcacctgctgaaaaccatgagccatagtaggcagccctctgatagcagtgtggatcga
tttacatcgaaagaagatgcagcagatgctggtgatcacgagaacaagccctccagggta
aagggggacatagggcactatactgacagagactgtgctcctttggtgcactgcgtcagg
ctgctgtcagcttccttcctgctcactggggacaaaggagctttagttcctgatagagat
gtgagagtcagtgtaaaagccttggcagtaagttgtgttggagcagccgttgcacttcac
cctgagtctttcttcagcaaactgtataaaacacccctggaggcaatgggagaagagtat
gaggagcagtatgtatcggacattctgaactacattgaccatggagatccccagattaga
ggagctacggccattctctgtggaacaattgtcaactccattctaattaaatcccgcttt
gatgtggaaaaatggctaataaatgtcagaagctcaacaggaaatctcttttccttgata
gactgcatacctttgttacagaaaacattgaaagatgagtcctctgttacttgcaaactg
gcttgtacagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgaacta
ggtttgcaattgattgttgacctcctaactctgaagaacagttcatattggcttgtaagg
acagaacttctggaaacacttgcagaggtagattttcggctagtcagcttcttggaagga
aaaactgagagcttgcacagaggtattcatcattatactggtctattaaaacttcagcag
agagtacttgaaaatgttgtaataagtctgcttggagatgaagatccaagagtgagacac
gtggctgcagcttcattaatgaggcttgttccaaagctgttttataactgtgatcaagga
caggctgacccagttgtggcagtagcacgagaccaaagcagtgtctacctgaaactcctc
atgcatgaaacgcagcccccatctcactttgcagtgagcactatcaccagaacatacaga
ggttacaatatgctgcaaagtccaacagatatcactatggaaaacaacctttcaagggtt
attgcagcaatttcccacgcattgacaatatccactacaagagcacttacgtttggctgc
tgtgaagctttgtgtcttctctccacaacatttccagtctgcacctggagtgtgggatgg
cactgtggtgtttcccagccaagttcttcagatgaagctcagaaaggctgcaccattggt
atggctggcttggtcctgtctctcctttcatcagcatggttcccactggacctctcagca
catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgctta
aagaatccctggagtgctgaagaagattcaaaccaaggtgctgctaagcaggaggaaccc
tggccagctctggcagatcgagcgcttgtcactttagtagaacagctcttttctcatctg
ctgaaggtcattaatatttgtgcacatgtgatggatgatgttgctcctggtccagcagta
aaggcagcattaccttctctcacaaacccaccttctcttagtccgattcggaggaagggg
aaagagagggagtctgtggaacaggcatctgtgccaatgagccctaaaaagagtggtgaa
gcaagtccagcttctaggcaagctgatgctgcagggcctgttccaacaagtaaatcatct
tcagtaggaagcttttatcatcttccatcatacctcaagttgtatgatgtcttgaaagca
acccatgctaattataaggttactttggatctccagaacactaatgagaagtttggatgt
ttcttacggtctgccttagatgttctctctcaaatcttggagcttgctactcttcaggac
attggaaagtgtgtagaagaaattttagggtatctaaaatcatgtttcaacagagaacca
acaatggcaacagtgtgtgtacagcagttgttgaaaacgttgtttgggacaaatctggct
tctcaatatgatggcttgtcttcaaaccccagcaaagctcaaggcaaagctcagcgcttg
ggttcctccagtctgaggcctggcctctaccactattgcttcatggcaccgtacacacac
ttcacacaggcccttgctgatgccagtctgaggaacatggttcaggctgagcaggagcac
gatgcttcaggatggtttgatgtgctgcagaaagtttctacacagctgaaaactagtatt
tccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcagtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctgcgagttaactactgtcttctg
gattcagatcaggtgtttattggatttgtgctaaagcaatttgaatacattgaagtagga
cagttcagggagtctgaagcaattattcctaatatcttctttttcctggtgttgctatct
tatgagcggtatcattccaaacagataattggaattccaaagatcattcagctgtgtgat
ggtatcatggccagtgggaggaaagctgttacacatgcaatacctgctctgcaacccatt
gttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagagctggaa
acccagaaggaggttgtagtgtcaatgctgctgagacttatccagtaccatcaggtacta
gaaatgttcatcttggtattgcaacagtgtcataaagaaaatgaagataaatggaagaga
ttgtcccggcaaatagctgacatcattctcccaatgcttgcaaaacaacagatgcatata
gactctcatgatgctctgggagtattgaacactttgtttgaaattttggctccttcatcc
cttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaacaatggcatca
gtgagcactgtccagctgtggatttctggaattttagctatccttagagttctgatttca
cagtcaacagaagacatcgttctatcccgtatacaggagctttccttctcaccatatttg
atttcatgtcaagcaatcagcagactgagatgtggagaaaataacgtgtccacaccagag
gatcgcactgaggtcaaacaggtgaaatacccacctgaggagacattttccagattctta
ctacaactggttggcattctattggaagatattgttaccaagcaattaaaagtggacatg
aacgagcagcaacatactttttactgccaggagctgggcacactgcttatgtgcttaata
catatcttcaaatcagggatgtttagaagaatcacagctgcagccaccagactttttaca
ggagatggatctgatggtagtttctatacccttgaaagtttgagtgaccttgttcagtcc
atgattcccactcatccttctttagttctcctctggtgtcaaatcctgcttcttgtcaat
tataccaactacaactggtggtcagaagtgcatcaaaccccaaagcgacacagcctttcc
actactaaattgcttagtcctcatatatctggagacagtgacgaatcagatttggaatct
aagcgtggcatgtgcaatcgtgagatagtgagaagaggagcactcattctcttttgtgac
tacgtttgtcaaaacctacatgattcagaacacctgacctggcttattgtgaatcacgtt
caagacttgattaatctgtcccatgagcctccagtacaagactttatcagtgctgttcac
aggaattcagcagccagtggtctcttcatccaggccattcagtcacggtgtgagaatctt
gcagctcccacaactctgaagaagaccttgcagtgcttggagggaatccacctgagccag
tccggggctgtgctgaccctgtacgtggacaagctgctgtgcactcccttccgagtgctg
gctcgcatggttgacaccctggcctgccgccgcgtggaaatgctgctggcagcaactctg
cagaacagcattgctcagttacctgttgaagaactggatagaattcaggagtaccttcaa
aacagtggattagcagcaagacaccaaagactttactcgctcttggataggtttcgtctt
atggtagcaccagccacaaccagtccttcacctctggttacctcacacccactagatgga
gaagaccaaccagctttagagactgtaatcctagacaaagactggtatgtgtcactagtg
aggtcacagtgttacgtcaagtctgactctgcactgctagaaggagcagagctggtaaat
aggattcctcagcctgacctgaactccttcatgaccagcaaggaattcaacctaagcttg
ttagcaccttgtttaagcctcggcgtgaatgagctctcaagggaccagaagaacagcctg
tttgagacagctcggagggtaactctggatcatgtgtcttctgctgtacaaaaccttcca
gccaaccaccaggtttttcagccactattgccaactgagccatcagcctactggaaaaaa
ctaagcgatatcttcggagatgaggtgatgtatcagtctatgatgacactttgtcgtgca
ctggctcagtatttgttgttactctcaaaactaccagccggtctccgtgttcctcctgac
aaagaggaagatatcctgaaattcgtagtgatgtcagtagaggcactatcatggcattta
gtgcatgaccagattccattaagtgtagatcttcaagctggtctggattgttgctgtctg
acactacagcagcctagtctctggaatttgctgtcttctgcagctcatgtgacatatgct
tgctccttaattaactgcattagatttatcatagaagcagttgctgtggaacctggtaat
caacttcttagtcctgaaagaaagaagaacacttcaaaacctttaagtgagggggaaatt
gattcaaatgcacagaaaacaaaacacattattgcagcatgtgaaatgatagcagagatg
gtggaatgcttacagactgtcttgtcattggggcacaaaaggaacagcagcatccctgcg
tttctcactcctgtcctcaagaacatcatcatcagtttagcaaggctgcctctagtgaac
agttacaccagagtacctcccttggtctggaaattaggctggtcaccaaagcctttgggt
gactttggcacagtttttcctgaaatcccagtagaattccttcaagaaaaggaaatcttt
aaggagttcatctatcgcattaatacacttggatggatcagtcgtactcagtttgaagag
acttgggctactctgcttggtgtgcttgtaactcagcccattgtaatggaccaagaggag
aaccagcaagaggaagatacagagaggacccaaattaatgttcttgcagtgcaagccata
acctccctggtgctgagtgcaatgaccatacctgttgcaggcaatccagcagttagctgt
ttggaacagcagccccgcaacaaagctttaaaagctctggacacaaggtttgggaggaag
ctaagtgttatcaggggaattgttgaacaggaaatccaggcgatggtgtctaagagagat
aatattgctactcatcacttataccaagcttgggaccctgttccatcactttctcctgct
actacaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaa
ataggagatatggattacaaactgggacaggtctctatacactcgatatggttaggaaat
aatatcactccactgagagaagaagagtggggtgaggatgaggaggatgagaatgacgta
cctgctctttcctcaccaccaacctctcctataaacaccaggaagcaccgggctggtgta
gatatccattcttgttctcagttcttgcttgaactgtacagtcagtggatattgccatcc
aaccctagcaagagaacaccagtcattttgatcagtgaagtggtgcgctcacttctggca
gtgtcagacttatttacagaaaggaatcagtttgagatgatgtacacaacactgacagag
ttgcgaaaggtgcatccatccgaagatgagattcttgtccagtatttgataccagctact
tgtaaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagtcgactg
ctggaatcaaccctaagaagcacccatatgccaagtcggattggagctctgcatggaatt
ctttatatccttgagtgtgacttgctcgacgagacagcaaagcaactcattccaattatc
agcgagtatctgctctccaatttgagaggaatagcacattgtgtgaatatccataaccaa
cagcacatcttggtaatgtgtgcagctgctttctatttgattgagaattacccacttgat
gtagggcctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagt
gatgaatcaacaccatccattatttatcactgtgtcctgagaggattggaacgactcctc
ctttcagagcagctttctaggctggacagtgagtcgctggttaaactgagtgttgacagg
gtgaatgtgcagagcccccacagagcaatggcagcccttggattaatgctgacttgcatg
tacacaggaaaggaaaaaatcagtcccagccgtataacagatgcaaatcctggtgctcct
gacagtgaatctgtgattgtagctatggaacgagtatctgtcctttttgataggatcagg
aagggatttccttttgaagctcgagtagtggctcgtattcttccacagttccttgatgat
ttcttccccccacaagatgtaatgaacaaagtcattggggaatttctgtccaaccagcag
ccatacccacaattcatggcaacagtagtttataaggtattccagacactgcatagcact
ggacagtcctcaatggtccgtgactgggtgatgctctctctctccaatttcacacaaaga
acacctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttccaccagt
cagtggatttcagcaattcttccacatattatcagtagaatgggaaaatcagagcaagtg
gatgttaacatcttctgtttggtggccatagacttctaccgacaccagattgatgaagaa
ttggatcggagggccttccagtcggtgtttgaggtggtagcatctccaggaaccccatac
catcgcctactgacttgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
