Aphelocoma coerulescens (scrub jay): 138110045
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Entry
138110045 CDS
T10543
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03020
RNA polymerase
Brite
Enzymes [BR:
acoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
138110045 (POLR1A)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
138110045 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138110045
NCBI-ProteinID:
XP_068870780
LinkDB
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Position
4:complement(73578646..73608690)
Genome browser
AA seq
1708 aa
AA seq
DB search
MRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKPITNPQYLDNVGNPAVNGLYDLALGPPDS
KEVCATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLL
LSQLKVLEKGLLHAVYDLEIILNRFVEQCADATGSEIEEELNRHVQEMLQSSQIRDRCSN
VKNVCECRNKLIAQFWKAHMGSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYHKSGEEGI
LDEIAGIDESQLGKRGYLTPMTAKEYILALWKNEGFFLHYLFPGMDPHESSGFSPDMFFL
DLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVMKDAQLIRKLLVFMAKEQCHPIKIAEEI
QTETGGDSEPLDRSVLTTIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLITEKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAPQTGLKIVCR
HIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMVSGVSMTIRGCFFTREQYMELVYRG
LTDKKGRIKIFPPAIMKPQRLWTGKQVVSTLLINIIPDKHAPLNLTGKAKIGGKAWIKGP
AKGFLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCLG
RLFTAYLQLYRGFTMGIEDILVKPEADHKRKKIIERSRQSGIEAVRAALNLPETASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNSYNNEVNKVCMPLGLHRRFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIRPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEALARMESHQANQQFKAIKKWRARHQNS
VQREGGFLLFSQKKLASVKAQLPGGEMKNGRDPATLQLLKMWYELDEKKRRKYLKKTNKC
PDPSLGVWRPDTYFASVSETFENGVEGYINKWESENSRSYVQSALSSDRLKDLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTP
MMSVPVFNTKKALKKVKQLKKLLTRVCLAEVLQKVDIEESLHVKHKLNMHHLYKIKFHFL
PHEDYREEKCVKPRQILHFMETRFFKVFLEAIKRKTTKMASFNEVSTRKTTRKDLDDDQD
KTLNSLEAVAEEEENIVDAEADEGDGDATEAKRRKNQQEEVDYESEEENGEENVNENPED
EEAESEKEEGTPGVEEDQNRAEGEDSQNPSFVSQTKKGKDRLLQSAEVRVSAVVESHPSI
QDYTFDTENELWCEVSLALPLTKVYFDLSSLLASLARSTVIHEVKGITRCLLNESTNKEG
EKEFVLHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVIIKEVKDVFAVY
GIVVDPRHLSLVADYMCFEGIYKPLSRFGIQSNSSPLQQMTFETSYKFLKEATMMGAHDE
LRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcccaaagtggtgccgtggcggcggctggtcggggtgtccttcgggatgtac
acggccgaggagatcaggaaactgagtgtaaaacccataacaaaccctcagtacctggat
aatgtggggaatccggctgtaaatggactgtacgacttggccttgggacctccggactcc
aaagaagtgtgtgcgacttgcatgcagaacttcagcaactgccccggacactttggccat
atagaactgcctctgactgtctacaaccccctgttcttcgataaattataccttttaatc
cgaggatcttgtctgaattgtcacatgctgacatgtcctcgagccgtggttcacttactg
ctaagtcagctgaaggtgctagagaaagggttgcttcacgctgtctatgaccttgaaatc
attctgaacaggtttgtagagcaatgtgcagatgcaacaggctcagaaattgaagaggag
ttaaatcgccatgtccaagaaatgttgcaaagctctcaaataagagatcggtgttctaat
gtcaaaaatgtgtgtgagtgtagaaataaactgatagcacagttctggaaagcgcacatg
ggttcaaagaaatgcccaaactgcaaatccaggagatcactggtgagaaaggagcacaac
agcaagctgacagtaacctatccttctacagtgtaccataagtcaggagaggaaggcatt
ctggatgaaatagcaggtattgatgaaagccagttagggaagagaggatacctgacacca
atgactgccaaggaatacatcctggctctgtggaagaatgaaggtttctttctgcattat
ctcttccctgggatggatccccatgaaagttcaggattcagtccagacatgtttttttta
gatctacttgtggttccaccttcaaggtatcgtcccgtgaatcgcgttggagaccgcctg
ttcacaaatgggcagactgtgaacttgcaggctgtgatgaaagatgcccagttaatacgg
aagctcttggttttcatggcaaaagagcagtgtcatccaataaaaattgcagaagaaatc
caaacagagacaggaggggatagtgaacctctggaccgttctgtgctgacaacgattcct
ggacagagcattgcagataagctgtacaacgcttggatacgtctgcagagccatgtcaac
attgtgtttgatagtgacatggacaagctgataacagaaaaataccctggtattcgtcag
ctgctggagaagaaggaagggctgttccgcaagcacatgatggggaagcgtgtggatttt
gctgctcgatccgtcatttgccccgatatgtacatcgggaccaacgagattggcatccct
atggtatttgctaccaaactgacttaccctcagccagtcactccctggaatgtcaaagag
ctgaggcaggctgtcatcaatggccccaaggtccaccctggggcctccatggtcattaac
gaggacggctctcgcacagtgctgagtgccaccagcctgacccagcgcgaggccatcgcc
aagcagctcctcaccccctcctcaggggcaccccagacagggctgaagattgtgtgtcgg
cacattaagaatggggatgtgctgttactgaaccgccagcccacgcttcacagaccttcc
atccaagctcaccgggcccgaatcctgcctggggagaaagtgctgaggcttcactatgcc
aactgcaaggcttacaatgctgacttcgatggggatgaaatgaacgcccatttcccgcag
agcgagctgggcagagcagaagcctacaccttagccttcactgatgagcagtacctcgtg
ccaaaggatgggaagccacttcctggcttgatccaagatcacatggtttctggagtcagc
atgacgatccggggctgctttttcaccagagagcaatacatggagcttgtgtaccgagga
ctgacagacaaaaaaggaagaattaaaatctttcctcctgccattatgaagccacagaga
ttatggacaggaaagcaggttgtttctacattgttaataaacatcattccagacaaacat
gctccactgaatttgactgggaaagcaaagattggcgggaaagcctggataaagggacct
gcaaaaggatttctgaatcttgattcaatgtgtgaatctcaggttattatcagagatggg
gaattactgtgtggagtcttggacaaagctcactttggcagctctgcctatggcctggtc
cactgctgctatgagatctatgggggtgaaaccagtgggaaagtgctgacgtgtctgggg
cgcctcttcactgcttacctgcagctgtacaggggatttaccatggggattgaagatatt
ttggttaaacctgaagcagatcacaaaagaaaaaaaatcattgaaaggtcgaggcagagt
ggtattgaagctgttagagctgctcttaatttgccagaaacagcatcatgtgaggaggtc
caagggaagtggcaggatgcccatctctgcaaagaccagagggattttaacatggttgat
atgaagttcaaggaggaagtaaacagttacaacaatgaagttaacaaggtttgcatgcct
ctaggtctccacaggaggtttccagagaacaatttgcagttgatggtacagtcaggagcc
aaaggatccactgtaaacacaatgcagatttcttgtttgctgggccagattgagttggaa
ggccggagacccccactgatggcatctggcaaatcactgccatgtttccagccttatgat
ttttcccctagctcaggaggatttgtgactggcagatttctcactgggatcagaccttct
gaattcttctttcactgtatggctggcagggaaggtcttgtggatacagctgtcaaaacc
agccgttctgggtacctgcaaaggtgtatcataaaacatttggaagggctggtagttcag
tatgacctgactgtacgagacagtgatggcagcgtggtgcagtttctctatggagaagat
gggcttgatatccctaaaactcagttcttacaaccggagcagtttcctttcattgcagaa
aactacgaggtaatccagaagacaaaccatctggatgaagctttagcaaggatggagtct
caccaagctaaccagcagtttaaagccatcaaaaagtggagagccaggcaccaaaactct
gtgcaaagagaaggaggctttctgttgttttcccagaagaaactggcaagtgtgaaagca
cagcttccaggaggtgaaatgaagaatggaagagatcctgctactttacagttgttgaag
atgtggtatgagctcgatgagaagaaacgaaggaagtatctgaagaagacaaataagtgt
cctgacccaagccttggggtttggcgtccagatacctattttgcatctgtttcagaaaca
tttgaaaatggagtcgaaggttatatcaataaatgggaatctgagaacagccggagttac
gtgcagtcagcactttcttcggatagattaaaggatctgttgtatttaaagtggcagcgt
tctctttgtgacccaggagaagctgtggggcttcttgcagctcagagtattggggaacct
tcgacacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcacg
ttgggtattccaaggttgcgggaaatactgatggtggccagctcaaacattaaaacaccc
atgatgagtgttcctgtgttcaataccaagaaagctctcaagaaggtgaaacagcttaag
aaactgctcacgagagtatgcttagctgaggtcttgcagaaagtggacattgaggaatcc
ctgcatgtgaagcacaagctgaacatgcatcacctctacaaaatcaaattccatttcttg
ccccatgaggattaccgagaggagaagtgtgtgaagcccaggcagatcttgcacttcatg
gaaacaaggttctttaaagtttttctggaagcaattaaaagaaagactacaaagatggca
tcttttaatgaagtcagcactcggaagacaactcggaaggatttagatgatgaccaagac
aagacactgaatagtctggaagctgtagcagaggaggaagagaacattgttgatgcagaa
gctgatgaaggggatggtgatgccacagaagcaaaacggaggaagaaccagcaagaagag
gtcgattatgagagtgaagaagagaacggggaagaaaacgttaatgagaatccagaagat
gaagaggctgaatctgaaaaagaagaagggactcctggtgttgaagaggatcagaacaga
gcagagggtgaagattctcagaatccttcctttgtgtctcagactaaaaaagggaaagat
cgattgcttcagtcagcagaggtgcgcgtgagcgctgttgtggagagccacccatccata
caggattacacgtttgacaccgaaaacgagctctggtgtgaggtttctttggcattgcca
ctgaccaaggtgtacttcgacctctcctcgctgctggcgtccctggcgcgcagcacggtg
atccacgaggtgaagggcatcacacggtgcctgctgaatgaaagtaccaacaaggaggga
gaaaaggaattcgttctccacacagaggggataaacctggcagagctcttcagatactct
gatattttggacctgaacagactttattccaatgatatccatgccatggctaagaattac
ggaattgaatcagccctgagggtgattataaaggaagtaaaagatgtgtttgctgtatat
ggaattgtggtagaccctcgacacctttcacttgtggcagattatatgtgttttgaagga
atttataaaccactgagtcgttttggaattcagtccaactcctcccctctgcaacagatg
acatttgaaaccagctacaaattcttgaaggaagcaacgatgatgggtgcccatgatgag
ctgcgatccccttcggcctgcctggtggttggaaaagttgtcaaaggagggactggcttg
tttgacctcaagcagcccctgacatag
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integrated database retrieval system
