Aphelocoma coerulescens (scrub jay): 138110440
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Entry
138110440 CDS
T10543
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03013
Nucleocytoplasmic transport
acoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138110440 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
138110440 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138110440 (THOC2)
03041 Spliceosome [BR:
acoe03041
]
138110440 (THOC2)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
138110440 (THOC2)
Spliceosome [BR:
acoe03041
]
Complex C
Other components
EJC/TREX
138110440 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138110440 (THOC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
138110440
NCBI-ProteinID:
XP_068871432
LinkDB
All DBs
Position
4A:complement(11435800..11486214)
Genome browser
AA seq
1608 aa
AA seq
DB search
MAALLPAEWIKNWEKGGKSEFVQLCRALSENKNHDVGFRDIQQALYELAYHVVRGNLKHD
QASNVLGDVIEFREDMPSILADVFCILDIETSCLEEKNKRDHFTQLVLACLYLVSDTVLK
ERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLS
GNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQTL
CHILGFKFKFYQDPSGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREIV
EAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWHHSQSI
MDQMPPFYATSHKPIAIALCQLVHVTVEPLYRRVGVPKGAKGSPISSLPNKRAPKQAESF
EELRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEVGTVKKFVSDRVVKFQSDGSKQ
EDKEKMETLFSCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNE
TYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKY
DNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVF
RKYPIELAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLK
AEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLY
DQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKY
DELKKAEKGNKQQHKVHKYITSCELVMAPVHEAVISLHLPKVWDDISPQFYATFWSLTMY
DLAVPHSSYDREVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQ
RVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPN
FSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGF
LTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKI
LPWYPKVLNLGQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHKD
PPARNAVPATVQNGPGGAGMPTSLTINTVRLEEGTTEETADKLKEKSQGVVKVINKTVNA
TPKVTTSNGNSASNSKIIKEKDDKEKSGKEKDKEKKDKTPAATPEMKALGKDGKDKPKEE
RANKDEKTREIKEKTPKSDKEKEKVKKEEKASKEEKSKTVVTIIESKSTAEKEREKEPSR
ERDLAKEMKSKENAKGGEKVPVAGSLKSPVPRSETSESEREQKRRKVDTHSSPSHSSTVK
DNLNELKDSSAKHYVNHTTPTLSKSKEREVEKKDLDKSRERSREREKKDEKDRKDRKRDH
SNSDREVPQDSTKRRKEENGTTGSSKHSKSESPSDSPRLNEKEKEKNKSKSSGKEKGDSI
KAEKMEKSSSGSKKESRHDKEKAEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgctcccggccgagtggataaagaactgggagaaaggcggcaagagcgag
tttgtgcagctgtgtcgtgctctcagtgaaaacaaaaaccatgatgtgggtttcagagat
atccagcaggctttgtacgagcttgcttaccacgttgtcagaggaaacttaaagcatgat
caagcttctaatgttcttggtgatgtcatagaattccgagaagacatgccttctatcctt
gctgatgtattctgcatattagatattgaaacaagttgtttagaagaaaaaaataagagg
gatcattttacacaactggtattggcctgtttgtatcttgtatctgacactgtcctaaag
gagcgtttagatccagagacgctggaatcactgggactcatcaagcagtctcaacagttc
aatcaaaaatctgttaaaataaagacaaaactattttataagcaacagaagtttaatttg
ctaagagaggagaatgaaggttatgcaaagctcattgcggaactgggtcaagacttatct
ggaaatatcactagtgatttaatccttgaaaatatcaaatctttaataggatgtttcaat
cttgatcctaacagagttttggatattatcctagaagtctatgagtgcaggcctgagtat
gatgatttctttgtaccactgatagagtcttacatgtacatgtgtgaacctcaaactctg
tgccatatccttggattcaaattcaaattttatcaggatccaagtggtgagaccccttcc
tccctatacagagttgctgctgtccttttgcaacataatctcatagatttggaagatctt
tatgttcatcttctaccaggggataatgccatcattgaggagcacaagcgagagatagtg
gaagctaaacaaattgtcagaaaacttacaatggtcgtcttatcatctgaaaagactgag
gaaaaggagaaagaaaaggaaaaagaggaggagaaaactgaaaagcctcctgataatcag
aaacttggcttattggaagccttattaaaaattggtgattggcaccattcacaaagtatt
atggatcagatgcctccgttctacgctacttcgcacaagccgattgcgatcgcgctttgc
cagctcgtccacgtgacagttgagcctctgtaccgcagagttggtgtacctaaaggagct
aaagggtcaccaatttcctctttgccaaacaagagagcaccaaaacaagcagagagcttt
gaggaattgagaaaggaagtgttcaacatgctttgttaccttggtcctcatctgtcccac
gatcccattttatttgcaaaagtagtacgtcttggaaaagcatttatgaaggaggttgga
actgtgaagaaattcgtcagtgacagagtggttaagtttcagtctgatggaagcaaacag
gaagataaagagaaaatggagacactgttcagctgtttgttgagtattactgatcaagtc
ttgcttccatctctttccttgatggactgcaatgcatgcatgtctgaggaattatgggga
atgttcaaaacctttccataccagtaccggtaccgtctctatgggcagtggaagaatgaa
acatacaatagtcacccacttcttgtgaaagttaaagctcaaaccatagaccgagccaaa
tacatcatgaagcgtttaactaaggaaaatgtgaaaccctctggaagacaaattgggaag
ctcagccacagcaatcctacaattttatttgattatattttatcacaaatacaaaaatat
gataacttgataactccggttgttgattcactgaaatacctcacttccctgaactacgat
gtcttggcatattgtatcattgaggcattggcaaaccctgagaaggagagaatgaagcat
gatgacactacaatctcaagctggctgcagagtctggcaagcttttgtggtgccgttttc
cgaaaatacccaattgaacttgcaggcctcctgcagtatgtagccaaccagctgaaagct
ggcaagagctttgatttgcttattttaaaagaggtagtgcagaaaatggcggggatagaa
attactgaagaaatgaccatggaacaattggaagccatgactggtggagaacaactgaaa
gctgagggtggatactttggccaaatcaggaatacaaaaaagtcatctcagagattgaaa
gatgcattattggaccatgatcttgccctcccactgtgcctgcttatggctcaacaaaga
aatggtgtcatctttcaagaaggaggggaaaaacatctgaagctggtgggaaagctgtat
gatcagtgccatgacaccctggtacaatttggtgggtttttagcatccaatctaagcaca
gaggattacattaagcgagtgccttctattgatgttctctgtaatgagtttcacacacct
catgatgctgcattctttctctcaagacccatgtatgcacaccacatttcatcaaagtat
gatgaactgaaaaaagctgagaagggaaataaacagcagcacaaggttcacaaatacatt
acatcatgtgagctggtgatggctcctgttcacgaagctgtgatttctctgcacctccct
aaagtctgggatgacatcagccctcagttttatgctacattctggtctttaacaatgtat
gaccttgccgtgccacacagcagctatgacagagaagtcaataaacttaaagtccagatg
aaagccatagatgacaatcaggaaatgcctccaaataaaaagaaaaaagaaaaagaacgt
tgcacagctctgcaggacaagctccttgaagaggagaagaagcaattggagcatgtgcag
agggttctacagagactgaaattagagaaagataactggcttctggcaaaatctaccaaa
aatgagactatcaccaaatttttacagttgtgtatatttcctcgatgcattttttcggca
attgatgcagtttactgtgctcactttgttgaactggtgcatcaacaaaaaacacccaac
ttctctacacttctctgctatgaccgagttttctctgatattatatatacagttgcaagt
tgcacggaaaatgaagccagtagatatggcaggtttttatgctgtatgctggagaccgtg
accagatggcacagtgacagagtcatatatgaaaaggaatgtggcaactatccaggcttc
ctaactatattacgagcaactgggtttgatggtggaaataaggctgatcaattggattat
gagaattttagacacgtggtacacaaatggcactataaattaactaaggcttctgtgcac
tgcctggaaacaggtgaatatacacatatcagaaacatcctgatcgtgctgaccaaaatc
cttccatggtatccaaaagtgctgaacctgggtcaagccttggaaagaagagtacacaag
atatgtcaggaagagaaagagaagagacctgatctatatgcattggcaatgggctattct
ggacagttgaaaagtaggaagcctttcatgatacctgaaaatgaatttcaccacaaagac
ccacctgccaggaatgctgtacctgcaacagtacaaaatgggccaggtggtgctgggatg
cctacgtctctcacaataaatacagttagactggaagagggcactactgaggagactgca
gataagctaaaggagaagtctcagggtgtggtgaaagttattaataaaactgtcaacgct
acaccgaaggtgacaacaagcaatggaaacagtgcatctaatagcaaaattattaaagag
aaagatgataaagagaaaagcgggaaggaaaaagataaagaaaaaaaagacaagactcca
gctgccactccggagatgaaggcacttgggaaagatgggaaagataaaccgaaggaagaa
cgggcaaacaaagatgagaaaacaagagagatcaaggagaaaacgccaaaatctgacaaa
gagaaggaaaaagtgaagaaagaagaaaaagcttcaaaagaggaaaagtccaagacggtt
gttaccatcattgagtcaaagtcaactgcagaaaaggagagagaaaaggagccatccaga
gaaagagatctagcgaaggagatgaaatccaaggaaaatgctaaaggaggagaaaaggtg
ccagtagctgggtccttgaagtcacctgttccccgatcagaaacatcagaatctgaaagg
gaacaaaaacgccgcaaagttgatacacattcttctccatcacattcctcaacagtaaag
gacaacctcaacgaactcaaggactcttcagcaaagcactacgtaaaccacactactcca
acactgtccaagagtaaggagagagaagtggagaagaaagatttggacaagtcaagggaa
agatccagagagagagagaagaaagatgaaaaggacaggaaagatcgaaaaagggatcat
tcaaacagtgaccgagaggtaccgcaggattcaactaaacgacgcaaagaggagaacggc
acaactggttcttcaaaacacagcaaaagtgaaagtccttctgattcccctcgcttaaat
gaaaaagagaaggagaaaaacaaatcaaaatcttcaggaaaagagaaaggtgattcaatc
aaggcagaaaagatggagaagagctcctctggtagcaaaaaggaatcaagacatgataaa
gaaaaagcagagaagaaagaaaaacgggacagtactggggggaaagaagaaaagaaacat
cataaatcttcagacaagcacagataa
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integrated database retrieval system
