Aphelocoma coerulescens (scrub jay): 138110461
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Entry
138110461 CDS
T10543
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04382
Cornified envelope formation
acoe04510
Focal adhesion
acoe04512
ECM-receptor interaction
acoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138110461 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138110461 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138110461 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138110461 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
acoe04147
]
138110461 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
acoe00536
]
138110461 (COL4A6)
Exosome [BR:
acoe04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138110461 (COL4A6)
Glycosaminoglycan binding proteins [BR:
acoe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138110461 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138110461
NCBI-ProteinID:
XP_068871476
LinkDB
All DBs
Position
4A:complement(13109856..13229628)
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AA seq
1692 aa
AA seq
DB search
MGRAGALVLLLLWLGAELASAGGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGLPGP
IGAPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGQ
PGLDGCNGTSGSPGISGPDGFPGLPGLPGRPGPKGLKGEPVFAQGSLKGLKGENGLPGLD
GVPGPKGFPGPVGPAGPIGLPGLQGPVGPLGPPGPKGNMGLGFQGEKGEKGDVGLPGPPG
PPPSTGILEFMGFPKGKQGEKGEPGPQGFPGDQGLPGIPGFGGVGEKGEKGVPGLPGGRG
LLGLDGSDGIPGRKGHPGVPGYPGLDGVEGMKGELGDIGPPGPPVVIDREGVVISGAPGD
PGNPGIPGPPGDEGIIGLPGLPGAPGFPGLERDGMGPGGSPGIPGVKGDVGEPGRATIGI
PGPPGRGGLPGLPGAPGLPGSPRPSFSPGTILSGRTGAPGEPGQRGLPGALGPKGYKGEA
GDCACDGGVTRAGLKGISGPPGLSGSPGVPGAKGIGGDPGSVGAPGLRGPPASAGQQGLP
GLKGEKGDPSYATVKGARGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPG
EKGLPGLPGTKGHRGETGSPGVGYPGPSGVRGPPGDPGMDGFPGQAGLPGPPGITLPCIV
PGAYGPPGTPGFPGLPGPKGSKGFSGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGE
QGSQGLPGLDGTDGLPGKMGASGLAGIKGAPGDVFGAESGALGEHGRPGLPGDKGLAGDI
GFPGPKGLDGRPGLLGIKGEQGHPGYSGVPGLRGPPGPGGPFGIKGKPGPLGPAGLAGAP
GLPGVKGVAGDVGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPYGQDGHPGFSGPKGEK
GSSGLLGFPGMPGLPGVPGVNGFKGAPGTAGGKGSPGVVGLQGQKGDRGDIGPPGPPVLG
TLEQALQIKGDKGDPGLAGLAGFPGPRGDKGIPGSRGQPGLPGPVGSASKERGLRGDPGF
PGPPGQPGLPGQKGAHGIMGFPGMPGERGSDGTIGILGFPGPIGLPGPKGDQGESVGVPG
IAGPKGERGDPGFPGERGREGLKGEPGYPGNTGVNGPKGSPGDLGQEGPAGIPGNAGLRG
SPGPPGPPGQPGSVGFPGARGTVGPKGFHGFPGLNGLNGLPGTKGSPGTPGLSEAGLKGP
AGLPGPKGEEGSPGLGRGAAGFPGPKGSSGDMGPPGPMGLPGLPGTPGVSLPSDIRGRPG
DAGIPGTDGSSGFPGPPGPQGPPGPASDQGDTGTPGFPGVLGLRGIKGDVGPAGPVGLPG
ASGFKGARGEPGLMGMPGKDGPPGDPGYAGLKGEMGRRGLPGRPGAPGITPQPEEVTAPA
GLPGLPGIDGVPGFDGDPGFHGLTGKPGPKGLPGRSGLKGRDGAPGTPGIVGEPGVPGAP
GPQGFEGAAGKPGSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVE
GQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSV
QIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLV
SPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQEQQFVSAPPSETLKAGQLRT
RVSRCQVCMKNL
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgcaggggcgctggtgctgctgctcctctggctgggcgcggagctggcgagt
gcgggtggaaagaagtcctacagtgggccatgtgggggccgcgattgcagcgcaggatgc
aaatgttttccagagaagggtgcacggggtcgaccaggaccgattggacttccaggacca
ataggagcacctggatttactgggccagaaggtttgcctggagcaaaaggtgagagagga
gcagtgggccctcctggaccagctggacagaaaggtgacaagggtccaatgggagttccc
ggatttcagggcatcaacgggatcccaggtcatcctgggcagtctggacctagaggccag
cctggcctcgatggctgcaatggtacctctgggagtcctggcatttctggaccagatggg
tttcctggcctacctggactgcctggtcgtcctggcccaaaaggccttaaaggagaacct
gtttttgctcaaggcagtcttaaaggattgaagggtgaaaatggtcttcctggattggat
ggagttcctggcccaaaaggttttccaggtccagtaggtcctgcaggccctataggatta
ccaggtttgcagggtccagtgggtccccttgggccaccgggtccaaaaggtaacatggga
ttaggctttcaaggagagaaaggagaaaagggagatgtagggctgcctgggcctccaggt
cccccaccatccactggaatactggaattcatgggatttccaaaggggaagcaaggagaa
aagggtgagccaggtcctcaaggattccctggagatcaaggattgcctggaatcccgggc
tttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttaccaggtggcaggggt
cttttgggactggatggatctgatggaattccagggagaaagggccatccaggtgttcca
ggctatccaggactggatggagtcgaaggcatgaagggtgaattaggtgacatcggtccc
ccaggccctcctgttgttattgacagggaaggtgtagtcatttcaggtgccccgggtgac
cctggaaacccgggaatacctggtcctccaggagatgaagggatcattggtttaccaggc
cttccaggagctccagggtttccaggcctggagagagatggaatgggccctggagggtct
ccaggtattccaggagtgaagggtgacgtgggagaaccaggaagagcaacaattggaata
ccaggccctcccggcagaggtggtttaccaggtctgccaggagcaccaggattgcctggt
tcaccacgcccttcattctccccagggacaatcctgagtggaaggactggggccccgggg
gagcctgggcaaagagggctgccaggagctttgggtccaaagggctacaaaggagaggca
ggtgattgtgcttgtgatggaggagttacaagagctggtctaaaaggcatctcaggtcca
ccaggtctgtcgggaagccctggtgtgcctggtgccaagggcattggtggagacccgggc
tctgtgggagcaccaggactgcgaggccctccggcttcagctggtcagcaaggacttcca
ggccttaagggagaaaaaggggatccatcctatgcaacagtcaaaggtgctcgtggggac
cgcggtgcaacagcgcccagaggaccttcaggcatcccgggaactccgggcagggatgga
cttccaggcttgccaggcccaccaggccctccaggtgatggtggactgggtttcccaggt
gaaaaagggctgccaggattacctggcaccaagggccatcgtggagaaactggttctcct
ggtgttggatacccaggtcctagtggagttcgtggaccaccaggtgaccctggaatggat
gggtttccaggacaagcaggtcttccaggccctccaggtatcaccttgccctgcatagtt
cctggagcatatgggcccccggggactcccggctttccaggactgccaggtcccaaaggc
agcaaaggcttttctggcattccaggccaacctgggttacatgggtctaaaggacagcca
gggtctccaggaataataggcttgcaaggggaacctggcttccctggacctcgaggagag
caaggctcacaaggacttccaggactggatggaacagatggtttgcctgggaaaatgggt
gcttcaggcttagctggaataaaaggagctcctggagatgtatttggtgccgagagtgga
gccctgggggagcatggccgacctggacttccaggtgataaagggcttgcaggtgatatt
ggatttccaggaccaaaagggctggatggaagaccaggcctcctgggtattaaaggtgaa
cagggtcatccaggatattcaggtgtccctggactgcggggacctcctggccctggaggt
ccttttggcattaagggaaaaccaggacccttggggccagctggccttgcaggagcacca
ggacttcctggagtcaaaggtgtggctggggatgtaggaccacaaggccctgctggtatg
aaaggcttcccaggtcttgatggtgctccaggatctcctggggaaagaggattcttaggg
cctcctgggccttatggtcaagatggacatccaggtttctctgggccaaaaggcgagaaa
gggtcttctggcctgcttggtttccctggcatgccaggactgcctggtgtccctggagtg
aatgggtttaaaggagctcctggcacagctggaggaaaaggaagtccaggagttgtggga
cttcagggtcaaaaaggtgacagaggtgatataggtcccccaggtcctcctgttcttggg
actttagaacaggcactgcaaatcaaaggagacaaaggagatcctggattagctggactt
gcaggattccctggacctagaggtgataaaggaatcccaggaagccgtgggcagcctggt
ctccctggtcctgttgggtcagcaagcaaagagagaggtcttcgtggtgacccaggcttc
cctggtccacctggacaacctgggctgccaggacagaagggtgcacatggtatcatggga
tttccaggaatgccaggagagaggggttcagatggcaccataggaatacttggattccca
ggacctattggccttcctggtccaaagggtgaccagggagagtctgttggtgttcctggc
attgctggaccaaaaggagagagaggggacccagggtttccaggagagagaggtagagaa
ggtctcaagggtgaaccaggctatccaggaaacacaggggtgaatggacccaaaggcagc
ccaggagatcttggccaagaaggaccagcaggaatccctggaaatgctgggctgagagga
tcccctggcccaccaggacccccaggacagccaggatctgttggattccctggagctcgt
ggaacagtgggacctaaaggctttcatggatttccaggtttaaatggtctgaatggcttg
ccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctggactgaaaggacct
gcaggtctcccaggtccaaagggtgaagaaggctctccaggcttgggaagaggagctgca
ggattccctggaccaaaaggctcatcaggagacatgggtccccctggtcctatgggactg
cctggcttgccaggaacacctggagtttctcttccatccgacatacgtgggagacctgga
gatgctggcattccaggcactgatgggagttcaggttttccaggtcctccaggaccacaa
ggaccccctggcccagcttctgaccaaggtgacacaggcactcccggtttccccggtgtt
cttggcttgcgaggcattaagggtgacgtgggacccgctggtccagttggactccctgga
gcatctggattcaaaggggcaagaggtgagcctggcctaatggggatgccaggtaaagat
gggcctccaggggatcctggttatgctgggctgaaaggtgaaatgggccgtcgaggtctc
cctggcagaccaggggctccaggaataaccccacagccagaagaagtcacagcccctgca
ggattacctggtctgccaggaattgatggtgtccctggctttgatggagatcctggattc
catggcctaactggaaaaccaggcccaaaaggtttgccaggaaggtcgggtttgaaaggg
cgcgatggcgcacccggaacacctggcatagttggggaaccaggagttccgggtgcccca
ggaccacagggatttgaaggtgctgctgggaagccgggttcccttggtttgccgggaatg
cctggtcggagcgtgggcgttggatacactctggtgaagcacagtcagtcagatcagatt
cccccctgccccatagggatgaacaagctctgggacggctacagcttactgtacgtggag
gggcaggagaagtcacacaaccaggatctcggttttgctggctcatgtttgcctcgcttc
agcaccatgccctttatttactgcaacatcaatgaagtgtgctactacgccagccgaaac
gacaagtcctactggctgtccaccactgctcccatccccatgatgcccgtggacagcgtc
cagatcccacagtacatcagccggtgctctgtgtgtgaagcaccttcccaggctgtggct
gtgcacagccaggacatcaccatcccacagtgtcctctgggctggcgcagcctgtggata
ggatactccttccttatgcacactgcagcgggggccgaaggtggaggccagtccctcgtc
tcacccggttcctgcctggaggatttccgagctactccgttcatcgagtgcaatggtgct
cggggcacgtgccattactttgccaacaagtacagcttctggctgaccacggtggagcag
gagcagcagtttgtcagtgctcctccctcagagactctgaaagcgggacagcttcggaca
cgggtcagccgctgccaggtgtgcatgaagaacttgtag
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