Aphelocoma coerulescens (scrub jay): 138110597
Help
Entry
138110597 CDS
T10543
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138110597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138110597
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138110597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
138110597
NCBI-ProteinID:
XP_068871798
LinkDB
All DBs
Position
4A:complement(20107181..20129487)
Genome browser
AA seq
564 aa
AA seq
DB search
MATELEPPAAGAVSGAAPLEAEEDEEHWLYGDDTTGKQEDGPISGHTESAHPLQDAPQES
RPVNNEDREMSQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGTSSSSSSHWEYSGSRRERERERERERDRERDRDRDRTPTTSEYNNDDERYRYYSRER
SYDFERDYRRSRDRSREREERHRERRHRDKDDSSKHKSSRRKQHESEEGESHRRHKHKKN
KRSKEEKEASEDGAQEGEEQDTKE
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggccgccggcgccgtgtcgggcgcggcgccgctggag
gcggaggaggacgaggagcactggctgtacggggatgacacaactggtaagcaagaagat
ggaccaatttctgggcacacagaatctgctcatcctctgcaagatgctccccaggagagc
cggcccgtcaacaacgaggacagagagatgtcccagcacgcccttcccagtggtgaggat
gatgaggatgacagtgacagtgacagcgatgacgatgacgtcaaggttacaattggcaac
atcaaaacgggagcgccgtcctacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatcagcttcagccaaattgcagcccaaaggtattgacttggatgct
gcagggaatataaatggattgcctgtgatagaagtggatttggattcatttgaagacaaa
ccgtggaggaaaccaggtgctgatctttctgattactttaattatggattcaatgaagaa
acatggaaagcttattgtgaaaagcagcggcggcttcagctggggctggaccctgctcct
cccatcagcactgagaacaagatcacggttcagcagggaagaacaggaaatgctgaaaaa
gaagtggaaaacaacatcatcaaaacagagttcaaaacagacttcctggctctggtggga
ggacgaatgaaggctgggcctcctcccaacaggaagctgggtgggaccattgatgtgatc
gggggccaggcaggcacgatccggagggtggagggaagacgccgggataaacacgcctcg
gaggagaaccccattcaggtcctgggagaccatggaagcaagccacagcccccccagcag
ccccagcagccttcccagccccagcagcctcctcagcagcagccattcgctccaccagca
gggcctccgcctcccccactcgctgggcctcctcctccacatttccttcaccctcctcct
ccagtgacttctgttccacctcccctgcatcctccgggcctgccacctccaggtccaatt
ccagggttgttcccacctcctctggcaccaccaccagctctcctcatcccaaccttggat
gggcagccagccagctacaacaacaggcagccacctccctttggctacaactctgcagat
tcaggtttcatcagctatccccccatctccacgtcccacacgccctgggtgaccacggtg
gacaagggcacgagcagctccagcagcagccactgggaatattcgggctccaggcgggag
agggagcgcgagcgcgagcgggagcgggacagggagcgagaccgggaccgcgaccgcacc
ccgaccaccagtgaatacaacaatgacgacgagcggtaccgctactacagccgcgagcgc
agctacgacttcgagcgcgattaccggcgcagccgcgaccgcagccgcgagcgcgaggag
cggcaccgcgagcgccgccaccgcgacaaggacgacagcagcaaacacaaatcctcccgc
aggaagcagcacgagagcgaggagggcgagagccaccggcgccacaagcacaaaaagaac
aagcggagcaaggaggagaaggaggccagcgaggacggtgcccaggagggcgaggagcag
gacaccaaggagtga
DBGET
integrated database retrieval system
