Aphelocoma coerulescens (scrub jay): 138110767
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Entry
138110767 CDS
T10543
Symbol
RAG1
Name
(RefSeq) LOW QUALITY PROTEIN: V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
138110767 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
acoe04121
]
138110767 (RAG1)
Enzymes [BR:
acoe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138110767 (RAG1)
Ubiquitin system [BR:
acoe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
138110767 (RAG1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1
RAG1_DNA-bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
TasA_anchor
Motif
Other DBs
NCBI-GeneID:
138110767
NCBI-ProteinID:
XP_068872045
LinkDB
All DBs
Position
5:23592850..23596048
Genome browser
AA seq
1065 aa
AA seq
DB search
MELLLLLENXLTTYLSFYFSGDLVSVRLQKSAASQMDLPEELQHPYTKFSEWKFKLFKLR
SFEKTPSDDSQHINKDQAEEAVSSNKEFILHKDEAVPRQEKMELTGNRQGLEEDAHAMQT
QDNRAHQNNLKELCRICGVSFKTDCYKKTYPVHGPVDDETLWLLRKKEKTATSWPDLIAK
VFKIDVRGDVDTIHPTQFCHNCWSIIHRKFSNTLCEVYFPRNSTMEWQPHSPNCDVCHTT
RRGLKRKSQPPSVQRGKRVKTTGERARLNRGVKNQAQINNKNLMKEIVSCKDIHLSTKLL
AVDYPVDFIKSISCQICDHILADPVETTCRHLFCRTCILKCIRVMGSYCPSCWYPCFPTD
LVTPVKSFLNILDNLSIRCPVKECDEEILHGKYGQHLSSHKEMKDRELYSYINKGGRPRQ
HLLSLTRRAQKHRLRELKRQVKAFAEKEEGGDIKAVCMTLFLLALRAKNEHKQADELEAI
MQGRGSGLHPAVCLAIRINTFLSCSQYHKMYRTVKAVTGRQIFQPLHALRTAEKALLPGY
HPFEWKPPLKNVSTNTEVGIIDGLSGLPLSIDDYPVDTIAKRFRYDAALVCALKDMEEEI
LEGMKAKNLDDYLNGPFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTVMNISIAHG
NESKRIFEEVKPNSELCCKPLCLMLADESDHETLTAILSPLIAEREAMKNSELLLEMGGI
LRTFRFVFRGTGYDEKLVREVEGLEASGSTYICTLCDATRLEASQNLVFHSITRSHAENL
ERYEIWRSNPYHESVDELRDRVKGVSAKPFIETVPSIDALHCDIGNATEFYRIFQMEIGE
LYKNPDVSKEERKRWQLTLDKHLRKKMNLKPMLKMSGNFARKLMSKETVEAVCELIKCEE
RHEALKELMDLYLKMKPVWRSSCPAKECPELLCQYSYNSQRFAELLSTKFKYRYEGKITN
YFHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRRFRKMNARQSKVYEMEDVLKHHWLY
TSKYLQKFMNAHKTLKSQSFTIDSEGGLDDSLPLEVLENNDSAEL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggaattattattacttttggaaaattagctaactacttatctatctttctatttctca
ggtgatctggtttctgtgagattgcagaagtcagcagcatcacaaatggacctacctgaa
gaacttcagcatccatatacaaagttttctgaatggaaattcaagctctttaaattgcga
tcatttgaaaaaacaccctctgatgacagccagcacataaacaaagatcaggcagaagag
gctgtttcttcaaacaaagaattcatcctgcataaagatgaagcagtgccaagacaagaa
aagatggagttaacgggcaataggcagggacttgaggaagatgcccatgcgatgcaaaca
caagacaatagagctcatcagaacaatttgaaggaactctgccgcatctgtggagtttca
tttaaaactgattgttacaagaagacttacccagtgcatgggccagtggatgatgaaact
ctgtggcttctgagaaagaaagaaaaaacagcaacctcttggccagaccttattgctaag
gttttcaagattgatgtgcgaggggatgttgatactatccatcccactcaattttgtcac
aactgttggagtattatacatagaaaattcagtaatactctatgtgaagtatattttcct
aggaacagcacaatggagtggcaaccacactccccaaactgtgatgtgtgccatactacc
agacgaggactcaagagaaaaagccagcccccaagcgtacaacgtggcaaacgtgtcaaa
accactggggagcgtgctcggctaaacagaggtgtaaagaaccaagcacagataaacaac
aaaaatttaatgaaggagattgtcagttgcaaggatatacatctcagcaccaagcttctt
gcagttgattacccagtagatttcattaaatccatttcttgccagatttgtgatcatatt
ttggcagatccagtggaaacaacatgcagacacttgttttgcagaacttgcatccttaaa
tgtatcagggttatgggcagctattgcccctcctgctggtatccttgctttcctactgat
ctcgtaaccccagtgaaatccttcctgaacatccttgataacctgagtataagatgccct
gtaaaggaatgtgatgaagagatcttgcatggaaaatatggccaacacctctccagccac
aaggagatgaaagatagagagctctatagctacataaataaaggtggccgaccgaggcag
cacctcctgtctttgacgaggagagctcagaaacatcgtctgagggaactgaagcgtcaa
gtcaaggcttttgctgagaaagaagagggcggtgatataaaggctgtatgcatgacttta
ttcctgctagctttgagagcaaaaaacgaacacaaacaagcagatgaactggaggctata
atgcaagggaggggatctggacttcatcctgctgtctgtctggccatccgaatcaacact
tttctcagctgcagtcagtatcataaaatgtacagaacagtaaaagctgtcactgggagg
cagatcttccagcctttgcatgctcttcgcactgctgagaaagccctcctaccaggttat
cacccatttgagtggaaacctcccttgaaaaatgtatccactaacacagaagtgggaatt
atagatggactatcgggactgccactctcaattgatgactacccagtagacacaattgca
aagagatttcgatatgatgcagccttggtttgtgccttaaaggacatggaggaggagatc
ttggaaggcatgaaagcaaaaaacctggatgactacttgaacggccccttcactgtggta
gtaaaagagtcctgtgatggaatgggagatgtcagtgagaagcatggaagtgggcctgct
gtcccagagaaggctgttcgcttttctttcacagtcatgaacatttctatagcacacggg
aatgaaagcaagaggatctttgaggaagtaaagcccaattcagagttgtgctgcaagccc
ttgtgccttatgctggctgatgaatcagatcatgaaactctgacggcaatcctgagcccc
ctcatagcagaaagagaggctatgaaaaacagtgaactgctgcttgaaatgggaggcatc
ctgagaacatttagattcgtctttaggggtacaggatatgatgagaaactcgtgcgggaa
gtggaagggctggaggcctcaggttccacttacatttgtaccctgtgtgatgcaacccgc
ttggaggcatcccaaaatctggtcttccactccataaccaggagccatgctgaaaatctg
gagcgatatgaaatatggaggtccaacccatatcacgaatctgttgatgagctccgtgac
agagtgaagggtgtttcagccaaaccttttattgagactgttccctccattgatgcattg
cactgtgacattggcaatgcaacagaattctacaggattttccagatggagattggtgaa
ctttacaagaatcctgatgtgtctaaagaggagaggaagaggtggcagctgactcttgac
aaacacctcaggaagaagatgaacttgaagcctatgttgaagatgagtggaaattttgct
agaaagctcatgtccaaggagacggtagaggccgtatgtgaattaataaagtgtgaagaa
aggcatgaagccctaaaagaactaatggacctttatctgaagatgaagccagtgtggcga
tcctcatgccctgccaaggagtgcccagaactgctgtgtcagtatagctacaattcacag
cgttttgcggagctcttatctacaaagttcaagtacagatatgagggcaagattacaaat
tatttccacaaaacacttgctcatgttcctgaaatcattgaaagagatgggtccattggg
gcctgggcaagtgaaggaaatgagtctggaaacaaactgtttaggaggttccgaaaaatg
aatgccaggcaatccaaagtctatgagatggaggatgtcttgaagcatcactggctatat
acctccaagtacctccagaagttcatgaatgctcataaaacattaaaaagccagagcttc
accattgattcagaaggtggtttagatgactcattgccactggaggtcttggaaaacaat
gattcagcagaactctaa
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