Aphelocoma coerulescens (scrub jay): 138111044
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Entry
138111044 CDS
T10543
Symbol
IGHMBP2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
acoe03009
]
138111044 (IGHMBP2)
03012 Translation factors [BR:
acoe03012
]
138111044 (IGHMBP2)
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138111044 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
138111044 (IGHMBP2)
Ribosome biogenesis [BR:
acoe03009
]
Eukaryotic type
Other ribosome biogenesis factors
138111044 (IGHMBP2)
Translation factors [BR:
acoe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
138111044 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Helicase_RecD
ResIII
AAA_16
nSTAND3
AAA_22
UvrD-helicase
DEAD
AAA_25
Flavi_DEAD
SLFN-g3_helicase
T2SSE
IstB_IS21
ABC_tran
DAP3
AAA
PhoH
NTPase_1
Glyco_transf_21
UvrD_C_2
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
138111044
NCBI-ProteinID:
XP_068872323
LinkDB
All DBs
Position
5:complement(1780156..1803575)
Genome browser
AA seq
1028 aa
AA seq
DB search
MAAEAAERHLGLLRDEREAELAQSRAWQESVSLKELQRRGVCLLKLQVTSQRTGLYGRLL
VTLQPRNRDSDTELPSNSFGPGDIVGLYESAGQGDPLCTGVVTRVTPKAVTVALEEPRDG
ELAVDHEHSFRLLKLANDVTYNRLKRALIALKQYRGGPASDLIDVLFFASAPRAFPETKP
LEFFNASLDESQREAVSFSLAQRELAIIHGPPGTGKTTTLVEVILQAVQQGLKVLCCAPS
NVAVDNLVERLAGGRARLLRLGHPARLLQPIQQHSLDAVLARGDNAQIVADIRRDIDQAW
AKTKKAQDKGERSHFMGEIKTLKKELKEREEAAMAAALSQAGIVLATNTGASSDGPLKLL
PETHFDLVVIDECAQALEASCWIPLLKAPKCILAGDHKQLPPTIISHRAAAEGLSLSLME
RLAGHYGERAVRMLTVQYRMHRDIMEWASSELYGGRLSAHPSVAQHLLRDLPGVSSTEET
GVPLLLIDTAGCGLFELEVEDEQSKGNPGEVQLVGMHVQALVDAGVKAKDIAVVAPYNLQ
VDMLRQHLGHSHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEERRINVAVTRA
RRQVAVVCDSHTVGSRPFLRRLLDHLSQHGLVRSAFEYLDDLVPQNYPGEGWAQRQQGPK
PPGPKARPAPAGKLKAAAAGAGSQKPGARSSPSTSGPGREGSGTKEGGDRFRAMLVAFLA
SSEAQLDFPASLNSHERMLVHVLAEECGLQHLSSGEGRDRYISVRKRLPQQPPLPSEPPL
PSEPLLPSEPLPEPQHPSGNTPDPAEPGKSSEGSGKVDLKSLHLERVQREKARREEAARK
VQEPSRGSRKKDKSEAKGKPVIGSAAGEDFDALISAATEADRTCGFPRCKASVTTLGQLC
HHCQRLFCLSHHIPEAHGCGEKAKAHARQRISREGILYPGSGSKDKSLDPAKRAHLQRRL
DKKLSELTSQRKGKKKDKRNEGPKCCFFNLKATAQPPEGEAAVLGLGGVGGSILGGKLGA
GSLSKPQG
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaggcggcggagcggcacctggggctgctgcgggacgagcgggaggccgag
ctggcacagagcagggcatggcaggagagcgtctccctgaaggaattgcagcggagaggt
gtctgcttgctcaagctccaggtcaccagccagagaaccggcctctatggacgtctcctc
gtgacattgcagcccaggaatcgggattcggacaccgagcttccctccaacagctttggg
cctggggacatcgtggggctgtacgagtcagccgggcagggggacccgctgtgcacgggc
gtggtgacacgtgtcacccccaaggcagtgacggtggccctggaggagccccgggatggg
gagctggccgtggaccacgagcactccttccgcctgctcaagctggccaacgatgtcacc
tacaacaggctcaaaagagctttgattgcactcaagcagtaccgtggtggcccagcctcc
gacctgattgacgtcctcttctttgcctctgctcccagggcgttccctgaaacaaagcct
ctggagttcttcaatgcctccctggatgagtctcagagggaagctgtgtccttctccctg
gctcagagggagctcgccatcatccacgggcctcccggcacagggaaaaccacgacgctg
gtggaggtcatcctgcaggctgtgcagcagggcctgaaggtgctgtgctgtgccccctcc
aacgtggccgtggataacctggtggagcggctggccggcggcagggcgcggctgctgcgg
ctgggccaccccgcccgcctgctccagcccatccagcagcactccctggacgccgtcctg
gcccgcggggacaacgcccagatcgtggccgacatcaggagggacatcgaccaggcctgg
gcaaaaaccaaaaaggcccaagacaagggagagcgaagccatttcatgggtgagattaag
accctgaagaaggagctgaaggagcgagaagaggctgccatggctgcagccctcagccag
gccggcattgtccttgccaccaacacaggtgcttcctcagacggccccttgaagctgctg
cctgaaacccactttgacctggtggtgattgatgagtgtgcccaggctctggaagccagc
tgctggatccctctgctgaaggctcccaagtgcatcctggctggggatcacaagcagctg
ccccccaccatcatctcccacagggccgcggccgaggggctgtccctgagcctgatggag
cggctggcggggcactacggggagcgggcggtgcggatgctgacggtgcagtaccgcatg
caccgggacatcatggaatgggcgtcctcggagctctacggcggccggctcagcgcacac
ccctccgtggcacagcacctgctcagggacctgccaggcgtgtcttccacggaagagacc
ggcgttcccttgctgctcatagacaccgctggctgtggcctgttcgagctggaagtggag
gatgaacagtccaagggcaatccaggggaggtccagctggtggggatgcacgtccaggcc
ttggtggacgccggtgtgaaggccaaggacatcgctgtggtggctccctacaacctccag
gtggacatgctccgacagcaccttggccacagccaccccgagctagaaattaaatcagtg
gatggtttccagggaagggagaaggaggcagtgatcctgtcctttgtcagatccaacagg
aaaggtgaggtgggcttcctggccgaggagcggcgcatcaacgtggcggtgacgcgggcg
cggcgccaggtggccgtggtgtgtgacagccacaccgtgggcagccgccccttcctgcgg
cgcctcctggaccacctgtcccagcacggcctcgtgcgctccgccttcgagtacctggat
gacctcgtgccccaaaattaccccggggagggctgggcccagcgccagcagggccccaaa
ccgccgggccccaaagcacggcccgctccggccgggaagctgaaggcggcggcagccgga
gcagggagccagaaaccaggagcacggagctcgccaagcacctctgggcctgggagagag
ggctcggggaccaaggagggtggggacaggttcagggccatgctggtggccttcctggcg
agcagcgaggcgcagctggatttcccagcatccctgaattcccacgagcggatgctggtt
cacgtgctggcggaggagtgcgggctgcagcacctgagctccggggagggccgggacagg
tacatcagtgtccgcaagagactcccccagcagccgccgctgccctccgagcccccactg
ccctccgagcccctgctgccctccgagccgcttcctgagccccagcatcccagcgggaac
acccctgaccccgcggagccggggaaaagcagcgagggctcagggaaagtggacctgaaa
tccctgcacctggagagagtccagagggagaaagccaggcgggaggaggcagcaaggaag
gtgcaggagcccagccgtggcagcaggaaaaaggacaagagcgaagccaaaggaaagccg
gtgatcgggagcgcggccggggaggatttcgacgctctgatctcggctgccaccgaagct
gacaggacctgtggcttcccccgctgcaaggcctctgtcaccaccctgggccagctctgc
caccactgccagcggctcttctgcctcagccaccacatccccgaggcccacggctgcggg
gagaaggccaaggcccacgcacggcagcggatcagccgggaagggatcctgtatcccggc
agcggctccaaggacaaatccctggatcctgccaagcgagcccacctccagcggcgcctg
gacaagaagctcagcgagctgacgagccagaggaagggcaagaagaaagacaagagaaat
gagggacccaaatgctgcttttttaacctcaaagccacagctcagccccccgagggtgaa
gctgctgttctgggcctgggtggagtggggggttccattttggggggaaagcttggagct
gggagcctttccaagccgcagggctga
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