Aphelocoma coerulescens (scrub jay): 138111096
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Entry
138111096 CDS
T10543
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138111096 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138111096 (PATL1)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138111096 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
138111096 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
138111096
NCBI-ProteinID:
XP_068872411
LinkDB
All DBs
Position
5:2366661..2374906
Genome browser
AA seq
764 aa
AA seq
DB search
MFRYPSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKA
GSSREPDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQQPGGLNS
SIWDSSAVLRRIRGPLLAQEMPSVSVLDYALPQRPLQARDEERDPSERALPRRSSSPVIG
SPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAPPAPPPSQLPHPQGPGSHLQNLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVARILPFL
APEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQ
SAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTELMLMATQELL
RIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggactgcccgctggacgaggatgaagacgccttccag
gccctgggggaggaggatgaagacatcgaccagttcaacgatgacaccttcggcgctggg
gccgtcgatgacgactggcaggaggcccacgagcggctggcggagctggaggacaaggcc
gggtcgagccgggagccggacggtcccgttgggaatgacggggacgttctgggcgatccc
gaggacgcgctggccgagcggctgacgcggctcgtcatcgacagcgagctggaggacccg
gccatcatgcaggccgtgcacaccagggatcccccgcagcagcctggagggctgaattcc
agcatctgggacagctcggccgtgctgcggcgcatccggggcccgctcctcgctcaggag
atgccgtcggtgtccgtgctggattacgccctgccccagaggcctctgcaggctcgggat
gaggagcgggatccatcggagcgggcgctgccccggcgctcctcgtcccccgtcatcggg
agccccccggtccgggccgttcccatcggcaccccccccaaacaggctgccatcccaaac
ttcaaccagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcagcagcgt
tatcccgctccctatggagagaggatgtcccccaaccagctctgcaatgttccgaattcc
tccctcctgggccacccgttcccccacagcgtctctcccgtcctcacacacctgcagaga
gcccagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtg
tccgggctggtggggagcccgctgccctccgtgaatcccaagctgctccagggcagagtt
gggcagatgatgtccccggccggagggttccgtgcctttttcggggctccccccgccccg
cccccctcgcagctgccgcaccctcagggccccggatcccacctgcagaacctgaggccg
cagccccagatgttccggccggacacgacccatttgcacccccagcaccgccggctcctg
caccagcggcagcagcagaaccggaaccagcaccggagcctcaacggctccgggggggac
cgagggggccaccggagcagccatcaggagcagatccgtaaggatccctacgccaacctc
atgctgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagcact
gacccctacctggatgattattattaccagaactacttccagaagctggagaagttggca
gcagccgaggaagtgcacggtgacggtcccaagaaggagcgcactaaactcatcacccct
caggtggccaagctggagcacacctacaagccagtgcagtttgagggctcgctgggaaaa
ctcaccgtctccagcgtcaacaacccccggaagatgatcgacgccgtggtgacgtcccgc
agcgaggatgacgagacgaaggagaagcaagtccgggataagaggcggcagaccctcgtc
acgatcgagaagacgtacagcctcctcctggacgtggaggactacgagcgccgctacctc
ctgagcctggaaggggagcggccagccctgatgggagagaggaagcagaagatctgtgac
atgtatgacaatctgagggggaaggcgcctgggcaggacaggccgagtgatgaccacttc
atgcagatcatgtgcatccggaaaggaaagcgcctggtggcccggatccttcccttcctg
gctccagagcaagcggccgacgtgctcatggccacggccaggaacctgcccttcctcatc
aagaaggatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccacgtcctc
taccaccttcccttgggaacagtcaccagccttgtgcagcagctcacgaacctacctcag
agcgccgccgctcccaccaacctgcacctcactgctgtgctccaaaacaagtttggtctg
tccctgctgtacctggtcctgagccgaggggaggaattgcagagctcggacacaaacacg
gagctgatgcaggacaaccaatggacggagctgatgctgatggcgacccaggagctcctg
cggatccctcagggagccttggcaaagcccgtgtccatcccctccaacttgatctccctc
ttctctcgctacgtcgaccagcagaagctgaacctgctggagacgaaattgcacttagtg
cacgggatccggtag
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