Aphelocoma coerulescens (scrub jay): 138111327
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Entry
138111327 CDS
T10543
Symbol
GTF2H1
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03022
Basal transcription factors
acoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
138111327 (GTF2H1)
09124 Replication and repair
03420 Nucleotide excision repair
138111327 (GTF2H1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138111327 (GTF2H1)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138111327 (GTF2H1)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
138111327 (GTF2H1)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
138111327 (GTF2H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
138111327
NCBI-ProteinID:
XP_068872999
LinkDB
All DBs
Position
5:18184880..18206876
Genome browser
AA seq
562 aa
AA seq
DB search
MAGMVKEQSLIVATMATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTVSHM
YADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRK
ANKELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLSLNAGDNSAAPSKQDVGIS
AAFLADVRPQTDGCNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEREFWTRFFQS
HYFHRDRLNTGSKDLFAECAKLDEKGLKAMVSQGVKNPLIDLTALEDKTLDEGYGVASVA
STSNASKSARESSNAAIIKRFNHHSAMVLAAGLRKQEAQNDHYSETSSTDGNSRDSDFFQ
PPLKKVKLQEAIEYEDLSKNNSVKTIALNLKKSDRYYHGPTPIQSQQYATSQDIINSFHS
IRQEMEAYVPKLTQVLSSGDAASTIAVLSPGGALMQGGTQQAINQMVPNDIQSELKHLYV
AVGELLRHFWSCFPVNTPFLEEKVVKMRSNLERFQVTKLCPFQEKIRRQYLSTNLISHIE
EMLQTAYNKFHTWQSRRMLKKT
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggctggaatggtgaaggagcaaagcctcattgtagccacaatggcaacgtcatctgaa
gaagtgttgctgatagtgaagaaggtgcgtcagaagaagcaggatggagctctgtacctg
atggctgaacgcattgcgtgggcacccgagggcaaggaccgcttcactgtcagccacatg
tatgcagacatcaaatgccagaaaatcagtccagaaggtaaagctaaaattcagctgcag
ctggtattgcatgcaggggacacaaccaacttccacttctccaatgaaagcacagcagtg
aaggagcgagatgcggtcaaggatcttcttcaacaactgttgcccaagttcaaaaggaaa
gctaataaagaacttgaggagaagaacagaatgctgcaagaagatcctgttttgtttcag
ctctataaagaccttgttgtgagccaagtaatcagtgctgaagaattctgggccaaccgt
ttaagcctgaatgcaggggataattctgcagcacctagtaaacaggatgtgggcatctct
gcagcattcctggctgatgtacggcctcagacagacggctgcaacgggctgaggtacaac
ttgacttcagatattattgaatccatctttcggacataccctgcagtaaaaatgaaatat
gcagagaatgttccacataacatgaccgagagggaattctggacacgattttttcagtct
cattattttcatcgggacaggctcaacacaggctcaaaagacctctttgcagaatgtgcc
aaactggatgagaaagggttaaaagcaatggtgtctcaaggagtgaaaaaccccctgata
gatttaacagctttggaagataaaacattagatgaaggctatggcgttgcttctgtggcc
tctacatcaaatgcctcaaagtctgctagagaaagtagcaatgctgccatcataaaacgc
tttaatcatcacagtgccatggtccttgcagctggcctcaggaaacaagaagcacaaaat
gaccattacagtgagaccagcagtacggacggaaactccagggattcagatttctttcag
ccaccactgaaaaaggtaaaactgcaggaggccattgaatatgaagatttatcaaagaat
aatagcgttaaaactattgcactaaatttaaagaagtctgataggtattaccatggtcct
actccaattcaatcacagcaatatgcaaccagtcaggatataattaattcatttcatagt
attagacaagaaatggaagcatatgtacccaaactaactcaggttctttcaagtggtgat
gctgccagcactattgcagtcctgtcacctggaggagcacttatgcagggtggaacacag
caagccataaaccagatggtgccaaatgacattcagtctgaactaaaacacttgtacgtg
gcagtaggggaactgctacgacacttctggtcctgcttccctgttaacacgccattccta
gaagaaaaggttgtgaaaatgaggagcaacttggaaagatttcaggttacaaagctctgc
ccattccaagaaaagattcgaagacaatatttaagcacaaatttgataagtcatatagaa
gagatgctgcagacggcctacaataagttccacacgtggcagtcccggcgcatgctgaag
aagacgtga
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