Aphelocoma coerulescens (scrub jay): 138112228
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Entry
138112228 CDS
T10543
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
acoe00536
]
138112228 (COL13A1)
Glycosaminoglycan binding proteins [BR:
acoe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138112228 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138112228
NCBI-ProteinID:
XP_068875070
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Position
6:complement(4445505..4499412)
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AA seq
664 aa
AA seq
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MGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQK
GEMGAAGPKGQPGPPGQKGEKGQCAEYPHREYLSTTLAALRSNQILTLKGEQGQAGIQGP
PGPPGPPGPTGPAGPEGTPGRPGPIGPPGRAGEPGKPGRDGKGLPGPPGPKGDTGIQGYP
GRKGEVGESGLPGAHGLPGASGPKGEKGEAGVKGERGMPGMPGRHGSKGAPGMTTAGMKG
EPGTPGEKGDPGVPGRMGPPGLPGKRGQRGEKGQAGDPGLPGPKGEKGIAENALVGAKGE
PGPPGLPGPPGPKGEAGDIGQPGAAGSQGEKGERGSPGDQGPMGPRGPKGEPGKDEIMDY
DGNISEALQEIRTLALMGPPGRPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPGEMG
PPGPHGLPGKDGPPGMKGEPGHVGVRGEKGDKGEPGQAGPPGLDGPTGEKGERGDQGIPG
PSGLPGPIGLPGLTGEKGEPGEHGDKGNPGELISGPPGPQGPPGPPGLQGVPGPKGEAGI
DGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVSGPAGPKGERGSKGDPGV
AGPMGPAGLPGLQGLPGDKGGRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQG
CWNK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgggaatccctgggcggccgggactaaaagggcagtccggagagaagggtgctccagga
gaagctggcatgtctatcattgggccccgtggtccacccggacagcctggaacaagaggt
tttcctggattcccgggccctattggcttggatggcaaaccgggccatcctggacagaag
ggagagatgggtgctgcaggtcccaagggacaacccggacccccaggacaaaaaggagaa
aagggtcagtgtgcagagtacccgcacagggaatacctaagtaccacacttgcagccctg
cgctctaaccagatccttacgctgaagggtgaacaaggacaagcggggatccaaggtccc
ccagggccccctggtcccccagggcccactggaccagctggacccgaaggaaccccagga
cgtcctgggccaattggaccccctggcagagcaggagagcctggaaagcctggcagagat
ggaaagggcttacctgggcctcctggaccaaagggagacactgggattcagggataccct
ggcagaaagggtgaggtgggcgagtcaggcctgcctggtgcccacggcctccctggagcc
tctggccccaagggtgaaaaaggggaggctggcgtaaagggggagagaggcatgccaggg
atgccaggaagacatggctctaagggcgctcctgggatgaccaccgcagggatgaagggc
gagcctgggactccaggagaaaagggagatcctggagtcccagggaggatgggcccccca
ggtttgccagggaagagggggcagcggggtgagaaggggcaagctggtgaccctggactt
cctggcccaaagggagagaagggaattgctgagaatgccttggtgggagctaaaggagaa
cctggccctccaggtctgcctggaccccctggaccaaagggagaagctggtgacattggt
cagcctggtgctgcaggatcacagggagaaaagggggaacgtggttcaccgggagaccag
ggacccatgggcccaaggggccccaaaggagagcctgggaaggatgaaattatggactat
gatgggaacatcagtgaagctctccaggaaatacgaactttggccttgatgggaccccca
ggacgtccaggggtggctggacctccagggccaccaggacagaagggtgaaattgggttg
ccaggtcctccaggccatgatggagaaaagggaccacgtggcaagcctggagaaatgggc
ccccctggccctcacggactcccaggaaaggatggacctcctggaatgaagggagagcca
ggccacgtcggggtcagaggagaaaagggcgataagggagagccaggacaagcaggccca
ccgggtctagatggccccactggagagaaaggcgaacgaggtgaccaagggataccagga
ccatcgggattgccaggtcctattggacttccaggattgacaggagagaagggtgagcct
ggggagcatggagacaaaggaaatccaggagaattgatatctgggccccctggaccccaa
ggccctccaggacctccaggtcttcagggcgttccaggacccaagggggaagcagggatt
gatggagtgaaaggagagaagggtgcccagggtgaaaaaggagacagagggccactggga
ttacccggtgcttcaggtttagacggcaggcctggaccaccgggtactccaggaccaatt
ggagtttcgggaccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagtt
gcaggaccaatggggccagcagggcttcctggtttacaaggtctacctggtgacaaggga
ggccggggggagaggggcaagaaaggctctagagggtctaaaggggataagggagaccaa
ggagcacctggattagatgcaccctgtccgttgggggaagatggccttccagttcaaggc
tgctggaataagtga
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